Variovorax paradoxus EPS: Varpa_1682
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Entry
Varpa_1682 CDS
T01392
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03030
DNA replication
vpe03410
Base excision repair
vpe03420
Nucleotide excision repair
vpe03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Varpa_1682
03410 Base excision repair
Varpa_1682
03420 Nucleotide excision repair
Varpa_1682
03440 Homologous recombination
Varpa_1682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpe03032
]
Varpa_1682
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_1682
Enzymes [BR:
vpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
Varpa_1682
DNA replication proteins [BR:
vpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Varpa_1682
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
Varpa_1682
NER (nucleotide excision repair)
GGR (global genome repair) factors
Varpa_1682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
Motif
Other DBs
NCBI-ProteinID:
ADU35892
UniProt:
E6V4Q1
LinkDB
All DBs
Position
1865384..1868197
Genome browser
AA seq
937 aa
AA seq
DB search
MTDKKTLLLVDGSSYLYRAFHAMPDLRAVPGDPKSPATGAIRGMINMMTALRREVRADYA
ACIFDAPGKTFRDDWYPEYKANRSPMPDDLRSQIDPIHEVVKLLGWPVLTVPDVEADDVI
GTLAKIAAAQGVEVIVSSGDKDLSQLVDEHITIIDTMNGKKRDVAGVTAEFGVPPNLMVD
YQTLVGDSVDNVPGVEKVGPKTAAKWLLEYGSLDALVERAAEVKGAAGENLRKALDKLPL
SRKLVTIRTDCDLEGHVTGLPSLEGLPVGAPQTSELKPFYEKFGFKSLVKTLEAQEVPPE
LIEENIKKKAAKANTDQGGLFDEPSDLSALDAAAPASNLKYDTITTWEQFDGWLAKLEAA
ELAAIDTETTSLDEMVAQIVGVSFSVEPGEAAYIPLTHNYPDAPAQLPIDEVLAKLKPWL
ENPEKKKLGQHIKYDRHVFANHGIEVEGYAHDTMLQSYVLEVHKPHGLASLAERHLGRSG
ISYEDLCGKGAHQISFSQVDIAKAAEYSCEDSDQTLDVHRTLWPQLEANEKLRFVYQLEM
DSSEALYRVERNGVMIDSATLAAQSHELGTRIMALEQEAYEIAGQPFNLGSPKQIGEIFF
TKLGLPVVKKTPSGAPSTDEEVLEKLAEDYPLPAKILEHRGLSKLKGTYTDKLGQLANPR
TGRVHTHYAQAVAVTGRLSSNDPNLQNIPIRTPEGRRVREAFVAPAGSVIASADYSQIEL
RIMAHISGDESLLRAFTEGIDVHRATAAEVFGSTPDQVSSEQRRYAKVINFGLIYGMSSF
GLAKNLGIETKAAASYIERYFARYPGVKAYMDETKALAKEQGYVETVFGRRLYLPEINSP
NGPRRGGAERAAINAPMQGTAADLIKLSMVKVQNVLDEEKRATKMIMQVHDELVFEVPEA
EVEWVRAEIPRLMAGVAALKVPLLAEIGIGPNWDKAH
NT seq
2814 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacaagaaaacgctgctgctcgtcgatggctcgagctatctctaccgagccttc
cacgccatgcccgacctgcgcgccgtgcccggcgacccgaagagcccggccaccggcgcc
atccggggaatgatcaacatgatgaccgcgctgcgccgcgaggtgcgcgccgactacgcc
gcctgcatcttcgatgcacccggcaagaccttccgcgacgactggtatcccgaatacaag
gccaaccgctcgccgatgcccgacgacctgcgcagccagatcgaccccatccatgaagtg
gtgaagctcctgggctggccggtgctcacggtgcccgacgtggaggccgacgacgtgatc
ggcacgctcgccaagatcgccgccgcgcagggcgtcgaggtgatcgtctccagcggcgac
aaggacctgagccagctggtcgacgagcacatcaccatcatcgacacgatgaacggcaag
aagcgcgacgtggcgggtgtgacggccgagttcggcgtgccgccgaacctcatggtcgac
taccagacgcttgtgggcgactcggtcgacaacgtgcccggtgtcgagaaggtcggcccg
aagacggcagccaaatggctgctcgaatacggctcgctcgatgcgctggtcgaacgcgct
gccgaagtgaaaggcgccgccggtgaaaacctgcgcaaggcgctggacaagctgccgctg
agccgcaagctcgtcacgatccgcaccgactgcgacctcgaaggccacgtcaccggcctg
ccgtcgctcgaaggcctgccggtcggcgcgcctcagaccagcgagctcaagcccttctac
gagaagttcggcttcaagagcctcgtgaagacgctcgaagcgcaggaagttccgcccgag
ctgatcgaggaaaacatcaagaagaaggccgccaaggccaacaccgaccagggtggcctg
ttcgacgagccttcggacctgagcgcgctcgacgccgccgcgccagcgagcaacctcaag
tacgacaccatcaccacctgggagcagttcgacggctggctcgcgaagctcgaagctgcc
gagctcgcagccatcgacaccgagaccacatcgctcgacgaaatggtcgcgcagatcgtc
ggcgtgagcttcagcgtcgagccgggcgaggcggcctacattccgctcacgcacaactat
cccgacgcgcccgcgcaactgcccatcgacgaggtgctcgcgaagctcaagccctggctc
gagaaccccgagaagaaaaaactcggccagcacatcaagtacgaccgccatgtgttcgcc
aaccacggcatcgaggtcgagggctatgcgcacgacaccatgctgcagagctacgtgctc
gaagtgcacaagccgcacggcctcgcgtccctggccgagcgccacctgggtcgcagcggc
atctcctacgaagacctgtgcggcaagggcgcgcaccagatttccttcagccaggtcgac
atcgccaaggcggccgaatactcgtgcgaagacagcgaccagaccctggacgtgcaccgc
acgctgtggccgcagctcgaagccaacgagaagctgcgcttcgtctaccagctcgaaatg
gattcgagcgaggcgctctaccgcgtcgagcgcaacggcgtgatgatcgacagcgccacg
ctcgccgcgcagagccacgaactcggcacgcgcatcatggcgctggagcaggaggcctac
gagatcgcgggccagcccttcaaccttggttcgcccaagcagatcggcgaaatcttcttc
accaagctgggcctgccggtggtcaagaaaacaccgagcggcgcacccagcaccgatgaa
gaagtgctggagaaactggccgaggactacccgctccccgccaagatcctcgagcaccgc
ggcctgtcgaaactcaagggcacctacaccgacaagctcggccagctcgcgaacccgcgc
accgggcgcgtgcacacgcactacgcgcaagctgtggcggtcacggggcgcctgagcagc
aacgacccgaacctgcagaacatcccgatccgcacgcccgaaggccgtcgtgtgcgcgag
gctttcgttgcgcccgcaggcagcgtgatcgccagcgccgactactcgcagatcgagctg
cgcatcatggcccacatcagcggcgacgagtcgcttctgcgtgccttcaccgaaggcatc
gacgttcaccgcgcaaccgccgccgaagtgttcggctccacgcccgaccaggtgtcgagc
gagcagcgccgctatgcgaaggtcatcaacttcgggctcatctacggcatgagcagcttc
ggcctcgcgaagaacctgggcatcgagaccaaggccgcagcctcctacatcgagcgctac
ttcgcgcgctacccgggcgtgaaggcgtacatggacgagaccaaggcgctcgccaaggag
cagggttacgtcgagaccgtgttcggccggcgcttgtacttgcccgagatcaattcgccc
aacggcccgcgccgcggcggtgccgagcgcgcggccatcaacgcgccgatgcagggcacg
gcggccgacctcatcaagctgagcatggtcaaggtacagaacgtgcttgacgaagaaaag
cgcgccaccaagatgatcatgcaggtgcacgacgaactggtattcgaagtgcccgaggcc
gaagtcgaatgggtgcgcgccgaaatcccacgcctgatggccggcgtggcggcgctcaag
gtgccgctgctcgccgagatcggcatcggtcccaactgggacaaggcccactga
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