Variovorax paradoxus EPS: Varpa_2103
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Entry
Varpa_2103 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
vpe04146
Peroxisome
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_2103
00071 Fatty acid degradation
Varpa_2103
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Varpa_2103
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_2103
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_2103
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_2103
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_2103
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Varpa_2103
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_2103
Exosomal proteins of breast cancer cells
Varpa_2103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADU36310
UniProt:
E6VAV6
LinkDB
All DBs
Position
complement(2288292..2290112)
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AA seq
606 aa
AA seq
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MTDAALPLLTLPQMLREQARLRPHDIAIRQKDFGIWHPLDWTGYLQRATRFGLGLHAMGL
APGGHLGVISENRVEWLLAQMGAGLIGAVTVGVYPTSPSNEVAYVVGHADIEVIVCEDQE
QTDKVLDAMAQLPRLRKIVVIETKGLASYLPEVRGLIATFAEVEQAGAEVQARDGTSLVD
AALARQTLADTGLMIYTSGSTGKPKGAMISYRNIRGVVPGIVERLGLDGDTTHLSYLPLC
HVAEQMLTAFVPVYLGSQVNFGESIRTVQEDLREVAPTMFLGVPRIWEKLHAGISIKMQE
AGRVQRALFHRAIAACAPLAEKPRNTWTLAERGRFALAYWTVLRALQNFIGLRRARVALT
GAAPIPADVVRFFRTLGVPLVEVYGLTESTGMIAGHRSDAVKIGTVGPPTQGTEHRVGEA
GELLVRGEMVFEGYYKNPEATASSIRDGWLYTGDVVREEDGHLRIVDRLKDIMITAGGKN
LTPSEIENTMKGSPFIKECIVVADGRKFVGALLQIDYETVGKWAEAERISFTHFRSLVEE
PRVRSLIEAEIARGNEKLAQVSQIRRFHLLTKELDHDDGEVTATMKVRRSSIYKTYASEI
EALYSA
NT seq
1821 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgccgcccttcccttgctgaccctgccgcagatgctgcgcgagcaggcgcgc
ctgcggccccacgacatcgcgatacgccagaaggacttcggcatctggcatccgctggac
tggaccgggtacctgcagcgcgccacccgcttcggcctcggcctgcatgcgatgggcctg
gcaccaggcgggcacctgggcgtgatttccgagaaccgcgtcgaatggctgctcgcgcag
atgggcgcggggctgatcggcgcggtcacggtcggcgtctacccgaccagcccgagcaac
gaggtggcctacgtggtcgggcatgcggacatcgaggtgatcgtctgcgaggaccaggag
cagaccgacaaggtgctcgacgcgatggcgcaactgccgcgcctgcgcaagatcgtcgtg
atcgagaccaagggcctcgcgagctatctgcccgaagtgcgcggcctcatcgcgacgttc
gcggaggtcgagcaagccggcgccgaggtgcaggcccgggacggcacctcgctggtcgat
gccgcgctcgcacgccagacgctcgccgacaccggcttgatgatctacacctcgggctcc
accggcaagcccaagggcgcgatgatttcctaccgcaacatccgcggcgtggtgcccggc
atcgtcgagcggctcgggctcgatggcgacaccacgcacctgtcgtacctgccgctgtgc
cacgtggccgagcagatgctcacggccttcgtgccggtgtacctgggctcgcaggtgaac
ttcggcgaatcgatccgcaccgtgcaggaagacctgcgcgaagtcgcgcccacgatgttc
ctcggcgtgccgcgcatctgggagaagctgcatgcgggtatcagcatcaagatgcaggag
gcggggcgcgtgcagcgtgcgctcttccatcgggccatcgcggcctgcgcgccgctcgcc
gagaagccgcgcaacacatggacgctggccgagcgcggccgcttcgccctcgcctactgg
acggtgctgcgcgcgctgcagaacttcatcggcttgcgccgcgcgcgtgtcgcgctcact
ggcgcggcgccgattccggcggacgtggtgcgcttctttcgcacgctgggcgtgccgctg
gtggaggtgtacggcctcacggaatcgaccggcatgatcgccggccaccgcagcgacgca
gtgaagatcggcaccgtcggtccgcccacgcaaggcaccgaacatcgcgtcggcgaagcg
ggcgaactgctggtgcgcggcgagatggtgttcgagggctactacaagaaccccgaggcc
acggcctcatcgattcgcgacgggtggctgtacacgggcgatgtggtgcgcgaggaagac
gggcatctgcgcatcgtcgaccggctgaaggacatcatgatcacggcgggcggcaagaac
ctcacgccgtccgagatcgagaacaccatgaagggcagccccttcatcaaggaatgcatc
gtggtggcggatggccgaaagttcgtcggcgcgttgctgcagatcgactacgaaacggtg
ggcaagtgggcggaggccgagcgcatttcgttcacccatttccgctcgctggtggaagag
ccgcgggtgcgatcgctcatcgaggcggaaattgcgcgcggcaacgagaagctggcgcag
gtgtcgcagatcaggcgttttcatctgctcaccaaagagttggatcatgacgacggtgaa
gtcaccgcgaccatgaaggtgcggcgctccagcatctacaagacctacgccagcgagatc
gaggcgctgtacagcgcctga
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