Variovorax paradoxus EPS: Varpa_2445
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Entry
Varpa_2445 CDS
T01392
Name
(GenBank) 2'-5' RNA ligase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpe03016
]
Varpa_2445
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
Varpa_2445
Transfer RNA biogenesis [BR:
vpe03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
Varpa_2445
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
Corona_NS2A
Motif
Other DBs
NCBI-ProteinID:
ADU36645
UniProt:
E6UZD2
LinkDB
All DBs
Position
complement(2648535..2649140)
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AA seq
201 aa
AA seq
DB search
MDDFNRGDHLPDDPEPDWDSPSFDRQRHLLIALFPEPDVQAAIETHRKDWIWPKGHYFPR
SPRLHLTLHCFGDQPQAVEKRLCEALAQVRVQPMNLVLDSSRTWRNDIAVLQPAEHGALR
TLHADIGRAVRQAGISTETPTFTPHITIARRTEGAAYPMRLPPIPWRVRKFLLVRSFTSH
PVEHQVLATYEADEDDEEDGV
NT seq
606 nt
NT seq
+upstream
nt +downstream
nt
atggacgatttcaaccgtggcgaccatcttccggacgacccggaacccgactgggactcc
ccttctttcgacaggcaacggcacctgctcatcgcgctgtttcccgaacccgatgtgcaa
gcggccatcgaaacgcaccgcaaggactggatctggcccaagggccattactttcctcgc
agcccgcgactgcacttgacgctccactgtttcggcgaccagccccaggctgtcgaaaag
cgcctatgcgaagcgctcgcccaggtccgggtgcagcccatgaatctcgtgctggacagc
tcacgcacatggcgcaacgacatcgcggtgctgcagcccgccgagcacggcgccttgcgc
acgctgcatgcggacatcggccgtgcggtacggcaggcgggcatttccacggaaacgccg
accttcacgccgcacatcaccatcgcccggcgaaccgaaggcgctgcctacccgatgcgc
ctgccgccgatcccctggcgcgtgaggaaattcctgctcgtacgctcgttcacttcgcat
ccggtcgagcaccaggtgctggccacctacgaagctgacgaagacgacgaagaagacggc
gtctga
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