KEGG   Variovorax paradoxus EPS: Varpa_2500
Entry
Varpa_2500        CDS       T01392                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Varpa_2500
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:vpe03021]
    Varpa_2500
   03019 Messenger RNA biogenesis [BR:vpe03019]
    Varpa_2500
Transcription machinery [BR:vpe03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Varpa_2500
Messenger RNA biogenesis [BR:vpe03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Varpa_2500
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N NACHT OB_RNB AAA_25 AAA S1CSD-TOTE-2 Spore_III_AA Fungal_virus_P2_C
Other DBs
NCBI-ProteinID: ADU36700
UniProt: E6UZI7
LinkDB
Position
complement(2710790..2712055)
AA seq 421 aa
MHLNELKALHVSEVLKQAEALEIENVGRMRKQELMFAIIKKRAKAGEQVFADGVLEILPD
GFGFLRSPDTSFTASTDDIYISPSQVRRFNLHTGDMIEGEVRTPKDGERYFALTKLDKVN
DGPPEQNKHKVMFENLTPLFPKEQMKLERDGVKGEENITGRIIDIIAPIGKGQRALLVAP
PKSGKTVMMQHIAHAISANYPDVHMMVLLVDERPEEVTEMQRTVKGEVIASTFDEPAARH
VHVAEMVIERAKRLVELKKDVVILLDSITRLARAYNNVVPSSGKVLTGGVDSNALQRPKR
FLGAARNVEEGGSLTIIGTALIDTGSRMDEVIFEEFKGTGNSEIHLDRRLYEKRVFPSIQ
LNRSGTRREELLLAPEILQKTRILRQLMYNMDEIESMELMLKNMKATKTNVEFFDMMRRG
G
NT seq 1266 nt   +upstreamnt  +downstreamnt
atgcacttaaacgaactcaaggcactccacgtgtctgaagtcctcaagcaggccgaagcc
cttgagattgaaaacgtcggccgcatgcgcaagcaggagctgatgttcgcgatcatcaag
aagcgcgcaaaggccggcgaacaggtcttcgccgacggcgtgctcgaaatcctgcccgac
ggcttcggcttcctgcgcagccccgacaccagcttcaccgccagcaccgacgacatctac
atctcgccgagccaggtgcgccgcttcaacctgcacaccggcgacatgatcgaaggtgaa
gtgcgcacgcccaaggatggcgagcgctacttcgcgctgaccaagctggacaaggtcaac
gacggcccgcccgagcagaacaagcacaaggtgatgttcgagaatctcacgccgctgttc
cccaaggagcagatgaagctggaacgcgatggcgtcaagggcgaagagaacatcacgggc
cgcatcatcgacatcatcgcccccatcggcaaaggccagcgcgccctgctcgtggcgccg
cccaagagcggcaagacggtgatgatgcagcacatcgcccacgcgatcagcgccaactac
cccgacgtgcacatgatggtgctgctcgtggacgagcgccctgaagaagtgaccgaaatg
cagcgcaccgtgaagggcgaagtcattgcttcgaccttcgacgagcctgccgcccgccac
gtgcacgtcgccgaaatggtgatcgagcgcgccaagcgcctggtcgaactgaagaaggac
gtggtgatcctgctggactcgatcacgcgtctggcccgcgcctacaacaacgtcgtgccc
tcgtcgggcaaggtgctgaccggcggtgtcgactccaacgcactgcagcgccccaagcgc
ttcctgggcgccgcgcgcaatgtggaagaaggcggctcgctgaccatcatcggcaccgcg
ctgatcgacaccggcagtcgcatggacgaagtgatcttcgaagagttcaagggcaccggc
aactccgaaatccacctggaccgccgcctgtacgaaaagcgcgtgttcccttcgatccaa
ctcaaccgcagcggcacgcgccgcgaagaattgctgttggcccccgagatccttcagaag
acccgcattcttcgtcagctcatgtacaacatggacgagatcgagtcgatggagctgatg
ctgaagaacatgaaggcgacgaagaccaatgtcgagttcttcgacatgatgcgtcgcggc
ggctga

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