Variovorax paradoxus EPS: Varpa_2513
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Entry
Varpa_2513 CDS
T01392
Name
(GenBank) Lytic transglycosylase catalytic
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vpe01011
]
Varpa_2513
Enzymes [BR:
vpe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
Varpa_2513
Peptidoglycan biosynthesis and degradation proteins [BR:
vpe01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
Varpa_2513
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
SLT
LysM
Motif
Other DBs
NCBI-ProteinID:
ADU36713
UniProt:
E6V0L2
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All DBs
Position
complement(2728103..2729716)
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AA seq
537 aa
AA seq
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MKFIAATCLAGSLVLAGCAAPTDNNSSSSTSPKIGTTAGGTGSKVAGSAAPVYPRDALSP
LSSGEAHSQSVVTLAPPTDMWDRIRRGFKMPNLESDLVRDREQWYASRPDYIQRMTERSN
KYMFHIVEELERRNMPTELALLPYIESAFNPQAVSSARAAGMWQFMPATGTDFDLKQNIF
RDDRRDVLASTRAALDYLQKLYGMFGDWQLALAAYNWGEGSVSRAIAKNQRAGLPTTYSD
LNMPAETRLYVPKLQAVKNIVANPQAFNAELPLIANHPYFQTVTLTRDLDVELAAKLADV
RIEDFRALNPAAHKPVLIAAGTPQILLPWDNAAVFQRNFDAYSQGQYASWTAWVVPNTMT
VADAAQRSGMSESDLRAMNNVPPRMLIKAGSTLIVPRGARVKEDVAAVVADGGHLSFQPE
IVNRRTTVKAGRNDSVASIARRYKLAPSNVAEWNDVKPNHAFKRGYSVVVYLPVRAAPAA
RVGAGVAVARGHAAASSKRSSAPAQANTARGKNVVKVPAGKQVVREKRGGTPSKKKR
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttatcgctgccacctgccttgcaggttcactggtgctcgcaggctgcgcggca
ccgaccgacaacaactcctcatccagcacttcccccaagatcggcaccacggccggcggc
accggctccaaggtcgccggcagcgccgcccccgtctacccgcgtgacgccctctcgccc
ctctccagcggcgaggcccactcgcagagcgtggtcacgctggccccgccgaccgacatg
tgggaccgcatccgccgcggcttcaagatgcccaacctcgagagcgacctcgtgcgcgac
cgcgagcagtggtacgccagtcggcccgactacatccagcgcatgaccgagcgctcgaac
aagtacatgttccacatcgtcgaggaactcgagcggcgcaacatgccgaccgaactcgcg
ctgctgccgtacatcgagagcgcgttcaacccgcaggccgtctccagtgcacgcgcagcg
ggcatgtggcagttcatgccggccaccggcaccgacttcgacctgaagcagaacatcttc
cgcgacgaccgccgcgacgtgctggcctccacccgcgccgcgctcgactacctgcagaag
ctctacggcatgttcggcgactggcagctcgcgctggccgcctacaactggggcgaaggc
agcgtgagccgcgccatcgccaaaaaccagcgcgccggcctgcccaccacctacagcgac
ctcaacatgccggccgagacgcggctgtacgtgcccaagctgcaggcggtgaagaacatc
gtggccaatccgcaggccttcaacgccgagctgccgctgatcgccaaccacccgtacttc
cagaccgtcacgctcacgcgcgacctggacgtcgaactggcggcaaagctggccgacgtg
cgcatcgaggacttccgcgcgctcaatcccgccgcgcacaagccggtgctgatcgccgcg
ggcacgccgcagatcctgctgccctgggacaacgcggccgtgttccagcgcaacttcgac
gcctactcgcaaggccagtacgcgagctggaccgcctgggtcgtgcccaacaccatgacg
gtggccgacgccgcccagcgctcgggcatgagcgagagcgacctgcgcgcgatgaacaac
gtgccgccgcgcatgctcatcaaggccggctccacgctcatcgtgccgcgcggcgcccgc
gtcaaggaagacgtggcggccgtggtggccgatggcggccacctgagcttccagcccgaa
atcgtcaaccgccgcaccaccgtgaaggccggccgcaacgacagcgtggcgagcatcgcc
cgccgctacaagctcgcgccctccaacgtggccgagtggaacgacgtgaagcccaaccac
gcattcaagcgcggctacagcgtcgtggtgtacctgccggtgcgcgcggcaccggccgct
cgggtcggcgccggcgtggcggtggcgcgcggccatgccgcggcgtcctcgaagcgcagc
agcgcacctgctcaagccaacacggcccgcggcaagaacgtcgtgaaggtgccggccggc
aagcaggtcgtgcgcgagaaacgcggcggcacgccgtcgaaaaagaagcgctga
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