Variovorax paradoxus EPS: Varpa_2851
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Entry
Varpa_2851 CDS
T01392
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpe03016
]
Varpa_2851
Enzymes [BR:
vpe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
Varpa_2851
Transfer RNA biogenesis [BR:
vpe03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
Varpa_2851
Prokaryotic type
Varpa_2851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ADU37043
UniProt:
E6V4V7
LinkDB
All DBs
Position
3060116..3061084
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AA seq
322 aa
AA seq
DB search
MNAPRTRVQRRPVHGVLLLDKPLGLSSNQALQKAKWLLRAEKAGHTGTLDPLATGVLPLC
FGAATKFSQLHLDADKTYEATARLGIKTSTGDAEGEVIAERPVHVTAEDLARAEAQFTGP
IRQVPPMHSALKKDGKALYEYAREGIEIERAPRDVVIHALKVTQAASESAGNAIRIVASV
SKGTYIRTLGEDIGEALGCGAHLTSLRRTATGGFGVAQCITLEALEAMGEEERLAQLLPA
ESLVEGHTIVTLGSEDAGRFLSGLRRRGAWADADHVAVFGDTPPAFLGTAHIAANELIPG
RLLNPIEIQQILLNAQQTEATP
NT seq
969 nt
NT seq
+upstream
nt +downstream
nt
atgaatgcgccacgcacacgggtgcagcggcgccctgtgcatggggtgttgttgctcgac
aaaccgctgggactttccagcaaccaggccttgcaaaaggccaagtggttgctgcgtgcc
gaaaaagcgggccataccggcacgctcgatccattggccaccggcgtcctgccgctgtgc
tttggcgctgccaccaagttcagccagctgcacctcgatgccgacaagacctacgaagcc
acggcgcgccttggcatcaagacctcgaccggcgatgccgaaggcgaggtgattgccgag
cgcccggtgcacgtcaccgccgaagacctggcccgcgccgaggcgcagttcaccggcccg
atccgccaggttccgccgatgcacagcgccctcaagaaggacggcaaggcgctctacgaa
tacgcccgcgaaggcatcgagatcgaacgtgccccgcgcgacgtcgtgatccacgcattg
aaggtcacgcaagcggcctccgaatcggcgggcaacgccatccgcatcgtggcctcggtg
agcaagggcacttacatccgcaccttgggcgaagacatcggcgaagccttgggctgcggc
gcgcatctcacgtcgctgcgccgtacggccaccggcggtttcggcgtggcgcagtgcatc
acgctcgaagcgctcgaagccatgggcgaggaagagcggctggcccagttgttgcctgcc
gaatccctggtcgaaggccacacgatcgtcacgctcggcagcgaagatgcggggcgtttt
ttgtccggcctgcgccgccgtggcgcctgggctgatgcagaccacgtggcggtatttggc
gacacgcctcccgccttcttgggcacggcgcatatcgccgccaacgaactgatcccgggg
cgcttgctgaaccccatcgaaattcagcaaattcttttgaacgcacaacagacagaagcg
acaccatga
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