KEGG   Variovorax paradoxus EPS: Varpa_2906
Entry
Varpa_2906        CDS       T01392                                 
Name
(GenBank) type VI secretion ATPase, ClpV1 family
  KO
K11907  type VI secretion system protein VasG
Organism
vpe  Variovorax paradoxus EPS
Pathway
vpe03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    Varpa_2906
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpe02044]
    Varpa_2906
Secretion system [BR:vpe02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   Varpa_2906
SSDB
Motif
Pfam: AAA_2 AAA_lid_9 AAA AAA_5 ClpB_D2-small AAA_16 AAA_22 Sigma54_activat AAA_7 ATPase_2 AAA_25 AAA_18 nSTAND3 NACHT Zeta_toxin T2SSE Clp_N Rad17 AAA_24 TsaE AAA_30 DUF815 AAA_33 Hpr_kinase_C NBD_SMAX1 MT
Other DBs
NCBI-ProteinID: ADU37097
UniProt: E6V5V6
LinkDB
Position
3126436..3129174
AA seq 912 aa
MTDIRRVSLFSKLNPMLYKALETATAFAKLRGNAYVELVHWLHQILQLQDSDMLRIVKRA
GLNLDAVEQDLVRALDRLPHGATSISDISEHVDNAVERAWVYASLRFEATSIRGGYLLAG
ITKTPGLRQVLSGISREFDKIVPDVLVAQLEAWTEGSPEDDYDITPNEGAGGGAPAMQHQ
GDGTPAGGSALAKYASDLTAKARAGELDPVYGRDEEIRQIIDILMRRRQNNPLLTGEAGV
GKTAVVEGLASRLASGDVPPSLKDVSLWVLDPTLLQAGAGVKGEFEQRLRQVIDEVEKSP
KPIVLFVDEVHTLVGAGGTAGTGDAANLLKPALARGRLRTIGATTWSEYKKYIEKDPALT
RRFQTIQVHEPTEPKAVIMLRGISAELEKHHGVLILDAALEAAVSLSHRYIPARQLPDKA
VSLLDTACARVALSQHALPAALEDLQRRIEVLGIESGIAGREAAIGVGEHQRVEDIAAQV
AAAQAELDLLEQRRLEESALVERIVALRKLLSPAAVPVQAEADVEVETEEDADPVGEAPQ
VDAEPERTPEDIRAELNEAQDKLVQLQGESPLILAAVDAQAIATVVADWTGIPIGRMVRD
DAQSVLRLGEILSARVVAQPDALETISRRIRTARARLDNPNKPVGVFLLCGPSGVGKTET
ALALSEALYGGEQNLVTINMSEFQESHTVSTLKGAPPGYVGYGEGGVLTEAVRRRPYSVV
LLDEIEKAHTDVHEIFFQVFDKGWMEDGEGRHIDFRNTVIIMTSNVGTDLVMQLCEDPTL
RPDPEPLAAALREPLLKVFAPALLGRLVVVPYYPLQADALHRIIRLQLDRIAARLDANHG
IAMHYDDSAVELVARRCTAIESGGRMIDAILTHTILPRLSEEVIGATVGARKLAGVRLSA
QEDDFRYEFSEA
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgaccgacatccgccgcgtctctctcttttccaagctgaacccgatgctctacaaggca
ttggagaccgccaccgccttcgccaagctgcgcggcaacgcctacgtcgaactcgtgcac
tggctgcaccagatcctgcagctgcaggacagcgacatgctgcgcatcgtcaagcgggcg
gggctcaacctcgatgcggtggagcaggacctcgtgcgcgcgctcgaccgcctgccgcat
ggcgcgacgtcgatcagcgacatctccgagcacgtggacaacgccgtcgaacgcgcgtgg
gtgtatgcgagcctgcgcttcgaggccacgtcgattcgcggcgggtatcttctggccggc
atcaccaagacgccggggttgcgccaggtcctctcgggcatctcgcgcgagttcgacaag
atcgtgcccgacgttttggtggcccaactcgaggcgtggaccgaaggctcgccagaagac
gactacgacatcacgccgaacgagggcgcgggcggcggtgcgccggccatgcaacaccag
ggcgatggaacgccggcaggcggctctgcgctcgcgaagtacgcgagcgacctcacggcc
aaggcgcgtgcgggcgaactcgatccggtctacggccgcgacgaggagatccgccagatc
atcgacatcctcatgcgccgccggcagaacaacccgctgctcaccggcgaggccggcgtg
gggaagacggcggtggttgaaggcctggcctcgcggctggcttcgggcgatgtgccgcct
tcgctcaaggacgtgtcgctctgggtgctcgaccccacgctgctgcaggccggcgcgggc
gtgaagggcgagttcgagcagcggctgcgccaggtgatcgacgaggtcgagaaaagcccc
aagcccatcgtgctcttcgtcgacgaggtgcacacgctggtcggcgcgggcggcacggcc
ggcaccggcgatgcggccaacctgctcaagcccgcgctcgcgcgcggccggcttcgcacc
atcggcgcaacgacgtggtcggagtacaagaagtacatcgagaaagacccggcgctcacg
cggcgtttccagaccatccaggtgcatgagcccaccgagcccaaggcggtgatcatgctg
cgcggcatttcggcggaactggagaagcaccacggcgtgctgatcctcgatgcggcgctt
gaagcggccgtgagcctgtcgcaccgctacattcccgcgcggcagttgcccgacaaggcc
gtgagcctgctcgacacggcgtgcgcgcgtgtggcactgagccagcatgcgcttccggcg
gcgctcgaagacctgcaacggcgcatcgaggtgctcggcatcgagtccggcatcgcgggg
cgcgaagccgcgatcggcgtcggagagcaccagcgtgtcgaggacatcgcggcccaggtg
gccgccgcgcaagccgaactcgatctgctggagcagcggcggctggaagagagcgcgctg
gtcgagcgcatcgtggcgctgcgcaagctgttgtcgcccgcggcggtgccggtgcaggcc
gaagccgacgtcgaagttgaaaccgaagaggacgccgacccggtcggcgaagcaccgcaa
gtcgatgcggagcccgaacgcacccctgaagacattcgcgccgaactcaacgaagcgcag
gacaagctggtgcagctgcagggcgaatcgccgctgatcctcgccgccgtcgatgcgcag
gccatcgccaccgtcgtggccgactggaccggcattcccatcggccgcatggtgcgcgac
gatgcgcagtccgtgctgcgcctgggcgagatcctctcggcccgcgtggtggcccagccc
gatgcgctggagaccatctcgcggcgcatccgcacagcgcgcgcgcggctggacaacccc
aacaagcccgtcggcgttttcctgctgtgcggcccctcgggcgtcggcaagacggagacc
gcgctcgcgctttcggaagcgttgtatggcggcgagcagaacctcgtgaccatcaacatg
agcgagttccaggagtcgcacacggtctccacgctcaaaggcgcgccgcccggctacgtg
ggctatggcgaaggcggcgtgctcaccgaagccgtgcgccgccggccctacagcgtggtg
ctgctcgacgagatcgagaaggcgcacaccgatgtgcacgagatctttttccaggtgttc
gacaagggctggatggaagacggagaaggacgccacatcgactttcgcaacaccgtgatc
atcatgacctccaacgtcggcaccgacctggtcatgcagttgtgcgaagacccgaccctg
cgccccgaccccgaaccgcttgcagcggcgctgcgcgaaccgctgctcaaggtgtttgcg
ccggcgctgctcgggcggctggttgtagtgccttattacccgttgcaggccgatgcgttg
catcgcatcatccgccttcagctcgaccgcatcgcggcgcggctcgacgccaaccacggc
atcgccatgcactacgacgacagcgccgtggaactggtggcgcgccgctgcacggccatc
gagtcgggcggccggatgatcgacgccatcctcacgcacaccatcctcccccggctgagc
gaagaggtcatcggcgccaccgtcggcgcgcgcaagctcgcgggcgtgcggctgtcggca
caggaagacgacttccgatacgaattctcggaagcataa

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