Variovorax paradoxus EPS: Varpa_2960
Help
Entry
Varpa_2960 CDS
T01392
Name
(GenBank) helicase c2
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
Varpa_2960
09124 Replication and repair
03420 Nucleotide excision repair
Varpa_2960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_2960
03036 Chromosome and associated proteins [BR:
vpe03036
]
Varpa_2960
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_2960
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
Varpa_2960
Transcription machinery [BR:
vpe03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
Varpa_2960
Chromosome and associated proteins [BR:
vpe03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
Varpa_2960
DNA repair and recombination proteins [BR:
vpe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
Varpa_2960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C_2
DEAD_2
HBB
DEAD
ResIII
Scm3
Motif
Other DBs
NCBI-ProteinID:
ADU37150
UniProt:
E6V6U6
LinkDB
All DBs
Position
3188457..3190781
Genome browser
AA seq
774 aa
AA seq
DB search
MAPASSTPPPDAASAVCVVSVKALCAFGAKAGDLDLRFVPAPSALEGMAGHALVQGRRGG
NYQSEVSLDARHGALRVRGRADGYVPDPPRVEEIKTFRGDFDAIRGNHRALHWAQARVYG
WMLCDQHGHAQMTVALVYLDLATGEEILLEEQHTREALREHFESLCERYSAWAQQEADHH
GALDRTLAQLAFPHQSFRTGQRELAEAVYRAAAGGRCLMAQAPTGIGKTLATIFPLLKAR
AAGKLDKVFFLTAKTSGRPVALDALRVLGKGCAAGGAQPRVLELAAREKVCEYPDRACNG
DSCPLAKGFYDRLPAARIEAAQTGWLDRQALRQVALQHTVCPYFLAQEMAHWSDVIVGDY
NYYFDGSAFLFATMKDADWRVAVLVDEAHNLLERARGMYTAQLEGGALEEAHRIAPAPVR
GPLARLFREWDSVQQSQTDNYETADEIPERFVRALQAANTAMAEYFAAKPEAAQGPLQRF
FFDALHFARLAEVFDDHSVFERTLGITQQDRTLAIRNLVPAPFLEGRFADAVSVTCFSGT
LSPFAFYRDALGLPPDTALLDVASPFHSQQLRVEVAMDVSTRFRDRAGSLGNVAGIIGAQ
FERMPGNYLAFFSSFDYLESARAAFSARHPGVPVWTQTRGMLEADRHGFIARFEEGGQGI
GFAVLGGAFGEGIDLPGSRLVGAFVASLGLPQYNALNEITRERMQSRFGKGYEYTYLYPG
LQKVVQAAGRVIRTEEDRGVLHLLDDRFARTEIRELLPRWWHVEVGGKARDAFR
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atggccccggcttcctccacccccccgccagatgcggcttcggccgtctgcgtcgtttcg
gtcaaggcgctttgcgctttcggcgcgaaggcgggcgacctcgacctgcgcttcgtgccc
gcgcccagcgcgctcgaaggcatggccggccacgcgctggtgcaggggcggcgcggcggc
aactaccagagcgaggtgtcgctcgacgcccggcacggcgcactgcgggttcgcggccgc
gccgacggctatgtgcccgatccgccgcgcgtggaagagatcaagaccttccgcggcgac
ttcgacgccatccgcggcaaccaccgcgcgctgcactgggcgcaggcccgcgtctacggc
tggatgctgtgcgaccagcacgggcatgcgcagatgacggtcgcgctcgtctacctcgat
ctcgctactggcgaggaaatcctgctcgaggaacagcacacccgcgaggcgttgcgcgaa
catttcgaatcgctgtgcgagcgctacagcgcgtgggcacagcaggaagccgatcaccac
ggcgcactcgaccgaacgctggcgcaactcgcgttcccgcaccagtctttccgcaccggc
cagcgcgaactggccgaagccgtctaccgcgccgccgccggcgggcgctgtctcatggcg
caggcgccgaccggcatcggcaagacgctggccacgatctttccgctgctcaaggcgcgc
gcggcggggaagctcgacaaggtcttctttctcaccgccaagacctcgggccggccggtg
gcgctcgatgcgctgcgggtgctcggcaaaggttgtgcagcgggcggcgcgcagccgcgc
gtgctcgaactcgcggcgcgcgaaaaggtctgcgaataccccgaccgcgcctgcaacggc
gattcgtgcccgctcgccaaaggcttctacgaccgcctgcccgccgcccgcatcgaagcc
gcacagaccggctggctcgaccgccaggcgctgcggcaggtcgcgctgcagcacacggtc
tgcccctacttcctcgcgcaggaaatggcccactggagcgacgtgatcgtgggcgactac
aactactacttcgacggcagcgccttcctcttcgccaccatgaaggacgccgactggcgc
gtcgcggtgctcgtggacgaagcccacaacctgctggagcgcgcacgcggcatgtacacc
gcgcagctcgaaggcggggcgctcgaagaggcgcaccgcatcgcgcccgcgccagtgcgc
ggcccgctcgcacggctcttccgcgagtgggactccgtgcagcaatcgcagaccgacaac
tacgaaaccgccgacgagattcccgagcgcttcgtgcgcgcgctgcaggccgccaacacg
gcgatggccgagtacttcgccgccaagcccgaggccgcgcaaggtccgctgcaacgcttc
ttcttcgatgcgctgcacttcgcccggctcgccgaggttttcgacgaccactcggtgttc
gagcgcaccctcggcatcacgcaacaagaccgcacgctggcgattcgcaacctcgtgccc
gcgccgttcctcgaaggccggtttgcggatgcggtctcggtcacctgcttctcgggcacg
ctctcgccgttcgcgttctaccgcgatgcgctcggcctgccgccggacaccgcgctgctc
gacgtggcctcgccgttccacagccaacagcttcgcgtcgaagtggcgatggatgtctcc
acgcgctttcgcgaccgcgccggatcgctcggcaatgtggccggcatcatcggcgcccag
ttcgagcgcatgcccggcaactacctggccttcttcagcagcttcgattacctggagagc
gcccgcgccgccttctcggcgcggcaccccggcgtgccggtgtggacgcagacgcgcggc
atgctggaggccgaccgacacggcttcatcgcgcgcttcgaggagggcgggcagggcatc
ggcttcgccgtgctcggcggcgcattcggcgagggcatcgacctgccgggcagccgcctc
gttggcgccttcgtcgcgagcctcgggctgccgcagtacaacgcgctgaacgagatcacg
cgcgagcgcatgcagtcgcgcttcggcaagggttatgaatacacgtatctctatccgggc
ctgcagaaggtggtgcaggcggcggggcgagtgatccgcaccgaagaagaccgcggcgtg
ctgcacctgctggacgatcgttttgcgcgcacggaaatccgcgagctgctgccgcgctgg
tggcatgtggaagtgggcggaaaggcacgcgatgcgttccgctag
DBGET
integrated database retrieval system
