Variovorax paradoxus EPS: Varpa_3065
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Entry
Varpa_3065 CDS
T01392
Name
(GenBank) RNA polymerase, sigma 54 subunit, RpoN
KO
K03092
RNA polymerase sigma-54 factor
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02020
Two-component system
vpe02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
Varpa_3065
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Varpa_3065
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_3065
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Varpa_3065
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_IclR
HTH_38
HTH_23
Fe_dep_repress
HTH_3
HTH_AsnC-type
Motif
Other DBs
NCBI-ProteinID:
ADU37252
UniProt:
E6V7Z1
LinkDB
All DBs
Position
complement(3304287..3305714)
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AA seq
475 aa
AA seq
DB search
MNSSIAMQARQAQAAIFSPRLQHAVRLLQLSSQEYAEALRDAAELNPFLEIDEPSVGGTP
EALAEPVRSEASSEAEAAFDRITAAPPAGTRHLSHDESLDAMQRLALPESLSAHLHAQLG
VLRLDERDAALAHAVVEALDDDGYLRMPLGDIALALGENPDDTEDEMRTALRRVQALDPA
GVGARSVPECLCLQLDAIEPVPVRALAQRILERHIDLLAAQDFAGIARAAGAPLAEVQCA
VAGIRRLNPRPGWGHGETGARLVVADVTVKKVRGAWRTTLNPHAVPRVRLNTACAQLLDT
RRGAHTGALKAYLEQARWMVGTVAQRTSTILEVARAIVARQQMFLEHGPLAMKPLGLKEI
ADEVGVHASTVSRTVNNKYIATPAGVFELQYFFSRGLQHTAGGASAPVAVQQLIRELIAI
EPPTAPLSDAALARQLAQQGFHIARRTITKYRQTLDIDPVERRRARGARLAAAAA
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgaattcatccattgccatgcaggcgcggcaggcgcaggccgcgatcttctctccccgg
ctgcagcatgccgtacggctgctccagctttcttcgcaggaatatgcagaggctcttcgc
gacgcggcggagctgaacccctttctcgaaatcgacgaaccctcggtgggcggcacgccc
gaagcgctggcggagccggtacggtctgaagcgagctctgaagccgaggccgcgttcgac
cgcatcaccgcggcgccgcccgcgggcacgcgccacctctcgcacgacgaaagcctcgat
gcgatgcagcgcctggcgctgccggagtcgctgtcggcgcacctgcatgcgcagctcggc
gtgctgcgcctggacgagcgcgatgcggcgctggcccatgcggtggtcgaggcgctggac
gacgacggctacctgcgcatgccgctcggcgacatcgctctcgccctcggtgaaaacccc
gacgacaccgaagacgagatgcgcaccgcgctgcgccgcgtgcaggcgttggacccggcc
ggcgtgggggcccgcagcgtgcccgaatgcctctgcctgcagctcgatgcgatcgagccg
gtgccggtgcgcgcgctcgcgcagcgcatcctggagcgccatatcgacctgctcgccgca
caggacttcgccggcatcgcgcgcgcagccggcgcgccgctcgccgaggtgcagtgcgca
gtcgccggcatccggcggctgaacccgcgcccgggctggggccatggcgagaccggcgcg
cgcctcgtcgtcgccgacgtcaccgtgaagaaggtgcgcggcgcgtggcgcaccacgctc
aacccgcatgcggtgccgcgcgtgcggctgaacaccgcctgtgcgcaactgctcgacacg
cggcgcggggcccacaccggcgcgctcaaggcctacctcgaacaggcgcgctggatggtg
ggtaccgtggcgcagcgcacctcgaccatcctggaggtggcgcgtgccatcgtggcgcgc
cagcagatgttcctggagcacgggccgctcgcgatgaagccgctgggcctgaaggaaatc
gccgacgaggtgggcgtgcatgcctcgaccgtctcgcgcacggtgaacaacaagtacatc
gccacgcccgcgggcgtgttcgagctgcagtacttcttctcgcgcggcctgcagcacacg
gccggcggcgcgagcgcgccggtggcggtgcagcagctcattcgcgagctcattgcgatc
gagccgccgaccgcgccgctgagcgacgccgcgctcgctcggcaactggcgcagcagggc
tttcacatcgcccgccgcaccatcaccaagtaccggcagacgctggacatcgacccggtg
gagcgacgccgcgcgcgcggcgcccggctcgcggccgcagcagcctga
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