Variovorax paradoxus EPS: Varpa_3283
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Entry
Varpa_3283 CDS
T01392
Name
(GenBank) exodeoxyribonuclease VII, large subunit
KO
K03601
exodeoxyribonuclease VII large subunit [EC:
3.1.11.6
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Varpa_3283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_3283
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.6 exodeoxyribonuclease VII
Varpa_3283
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
Varpa_3283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_VII_L
tRNA_anti_2
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
ADU37468
UniProt:
E6VB19
LinkDB
All DBs
Position
complement(3535942..3537354)
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AA seq
470 aa
AA seq
DB search
MHLPRTGDLGLGKSGLLWKSGFRPFVRFVNLRETNSAPGPRIWAVGALCRAVADTLDARF
NPVSVRGEISGFSRASSGHCYFSLKDESGQLRCAMFRRAAGLLDFSPRDGDQVEVRGRLA
VYEPRGDLQLVVESLRRAGQGALFEQFLQRKARLEAEGLFDPARKRALPTMPRAVGVVTS
LGAAALHDVVTALRRRVPHIPVVLAPAAVQGANAPAELVRALQSLYTLEPAVDVILLVRG
GGSIEDLWAFNDETLARTIVQSPVPVVSGVGHETDFTIADFCADLRAPTPTAAAELVSAP
RDQWLGALDLLNERLGDALGTRLDVLGQRLDQAAGRLGRPSNLVARQQLRLAHHAQRLHF
AVLSRQERLAQVPRSIAADLPAKFDRALVQRRERLERVALRLRLLDPALVLQRGYAWLTD
ADGRAVVSAKKLHAGDAVVARLADGEVDLTVTHGGSNNGNTSDALSKISS
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
gtgcacctgccccgcacgggggacttggggctggggaagtcaggcctgttgtggaagagt
ggctttcggccattcgtgcgctttgtgaacttgcgtgaaacgaattcggcgcccgggccg
cgcatctgggctgtcggcgcgctgtgccgggccgtggccgacacgctggacgctcgcttc
aatccggtcagcgtgcgcggcgagatatcgggtttttcgcgcgcctcaagtggacattgt
tacttctcgctcaaggacgagtccggccagttgcgctgcgcgatgttccgtcgcgccgcc
ggattgctcgatttttcgcctcgcgacggtgaccaggtggaggtgcgaggacgtcttgcc
gtgtacgagccgcgcggcgacctccaactggtcgtcgaaagcctgaggcgtgccgggcag
ggcgcgctcttcgagcagttcctgcagcgcaaggcgcgcctcgaagccgaggggctgttc
gatccggcgcgcaagcgcgcgttgcccaccatgccgcgcgcggtcggtgtcgtcacttcg
ctcggcgcggctgcgctgcacgacgtcgtgaccgcgctgcgacggcgcgtgccgcacatt
cccgtggttttggctccggcagcagtgcagggcgctaatgcgcccgccgagctggtgcgc
gcgctgcagtcgctctacacattggagcccgccgtcgatgtgatcctgctggtgcgaggc
ggtggttcgatcgaagacctgtgggccttcaacgacgagacgctggcgcggaccatcgtg
cagagccccgtgccggtggtgagcggtgtcgggcacgaaaccgacttcaccatcgccgac
ttctgcgcggacctgcgtgcgcccacccccaccgccgcggccgaactcgtcagcgcgccg
cgcgaccagtggctcggggcgctcgatttgctcaacgagcggctcggcgatgcgctgggc
acgcgcctcgacgtgctcgggcagcggctcgatcaggccgcgggccgcctcggccgccca
tcgaatctggtggctcgccagcaacttcgcttggcgcaccatgcgcagcgcctgcacttt
gcggtgctgtcgagacaagagcgcttggcgcaggtgccgcggtcgatcgcggccgatctt
ccagcgaagttcgaccgcgcacttgtgcagcggcgcgaacgcctggagcgcgtggctctg
cgcctgcgtctgctcgatccggcactcgtactgcagcgcggctacgcctggctcaccgat
gcggatggccgggcggtcgtcagcgcgaaaaagctgcatgcaggcgatgcggtcgtcgca
aggctcgcggatggcgaggttgacctgaccgtgacgcatggagggagcaacaacgggaac
acgtccgacgcgctctcgaaaattagttcctag
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