Variovorax paradoxus EPS: Varpa_3344
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Entry
Varpa_3344 CDS
T01392
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Varpa_3344
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_3344
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Varpa_3344
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Varpa_3344
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
Glyco_tran_WecG
ERCC3_RAD25_C
AAA_30
IstB_IS21
Motif
Other DBs
NCBI-ProteinID:
ADU37529
UniProt:
E6UV17
LinkDB
All DBs
Position
3600369..3603851
Genome browser
AA seq
1160 aa
AA seq
DB search
MDLPHLTAGKRFTLPRPPLSADALLLAQLGMREKAAGRATAMFTADANDAQRLIDEIKFF
APDLRCALFPDWETLPYDSFSPHQDLISERLATLWRISQKEADVVLVPATTALYRLAPPA
FLAGYTFHFKAKQKLEESKLKAQLTLAGYSHVTQVVSPGEYAVRGGLIDLFPMGSLVPFR
VDLFDDEIDSIRTFDPDTQRSLYPVPEVRLLPGREFPMDDDARARFRSRWRELLEGDPTK
SRIYKDMGNGVATAGIEYYLPLFFDETATVFDYLGPDATVVLHGDLEPAFQHFWQDTNER
YRLVRGDPERPALPPEALFLNAEQFYQRAKPHAQLAIRGNIATDTPYAEFDKLPPFAVVR
GAEDPLVGLKAHIAATPHRVLMIAESDGRRESLLDFLRASGVSPPAFDSLAEFEASTDEK
IGIVTAALASGFAWREQGIDLVTETELFATAPTTRRRNKKQEQVSDVEALIKDLSELNVG
DPVVHTAHGIGRYRGLMHMDLGQGVDAEGKPLLQEMLHLEYADKATLYVPVSQLHQISRY
TGVSADEAPLHRLGSGQWEKAKRKAAEQVRDSAAELLNIYARRAAREGHAFRYSAADYEV
FANDFGFQETADQKAAIHAVVQDMISPQPMDRLVCGDVGFGKTEVALRAAFIAITGGKQV
AFLAPTTLLAEQHYQTLVDRFAKWPVKVAEMSRFRSAKEITAAAKGLAEGQIDIVVGTHK
LLSQSVKFKNLGLLIIDEEHRFGVRHKEAMKAMRAEVDVLTLTATPIPRTLGMALEGLRD
LSVIATAPQRRLAIKTFVRNEGTGVIREAVLRELKRGGQVYFLHNEVETIENRRQKLEEI
LPEARIAVAHGQMPERELERVMRDFVAQRYNLLLCSTIIETGIDVPTANTIVMSRADKFG
LAQLHQLRGRVGRSHHQAYAYLMVPDTEGLTKQAAQRLDAIQQMEELGSGFYLAMHDLEI
RGTGEVLGENQSGNMMEIGFQLYNEMLSEAVRALKAGQEPDLLSPLSVTTEINLHAPALL
PDDYCGDVHLRLSFYKKLATAKTPDQIDTLLEEIVDRFGKLPPQAQTLIDTHRLRVLARP
YGVVKVDAAPGIINITFKKDAPVDGMAIIQLVQKNKHIKLAGNEKLRIERELKEPKDRAQ
MVRDVLRSLGQPLVKEPAPA
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atggacctcccccaccttacggcgggcaagcgtttcacgctgccgcgcccccctctgtcg
gccgatgccctgctgctcgcgcagctgggcatgcgcgagaaggccgccggccgcgccacc
gcgatgttcacggccgacgccaacgacgcgcagcgcctcatcgacgagatcaagttcttc
gcgcccgacctgcgctgcgccctctttcccgactgggaaacgctcccctacgacagcttc
tcgccgcaccaggacctgatcagcgaacgcctggcgaccctctggcgaatcagccagaaa
gaggccgacgtggtgctggtgcccgccaccaccgcgctctaccgcctcgcgccgcccgcg
ttcctggccggctacaccttccacttcaaggccaagcagaagctcgaggaatccaagctc
aaggcccagctcacgctggccggctacagccatgtgacgcaggtggtgagcccgggcgag
tacgcggtgcgcggcggcttgatcgacctcttccccatgggttcgctggtgccgtttcgc
gtcgacctgttcgacgacgagatcgactccatccgcactttcgaccccgacacccagcgc
agcctctaccccgtgcccgaagtgcgcctgctgccgggccgcgagttcccgatggacgac
gacgcccgcgcgcgctttcgcagccgctggcgcgaactgcttgagggcgacccgaccaag
agccgcatctacaaggacatgggcaatggcgtggcgaccgccggtatcgagtactacctg
cccctcttcttcgacgagacggccacggtgttcgactacctcgggcccgatgccacggtc
gtgctgcacggcgacctcgaacccgcattccagcatttctggcaggacacgaacgagcgc
taccggctggtgcgcggcgaccccgaacgtcccgcgctgccgcccgaggcgctgttcctc
aatgccgagcagttctatcagcgtgccaagccgcacgcccaattggccatccgtggcaac
atcgccaccgacacgccctacgccgagttcgacaagctcccgcctttcgcggtggtgcgc
ggcgccgaagacccgctggtcggcctgaaggcccacatcgccgccacgccgcaccgcgtg
ctgatgattgcggaaagcgacggccggcgcgaaagcctgctcgacttcctgcgcgcaagt
ggcgtgagcccaccggccttcgactcgctggccgagttcgaggcgtccaccgacgagaag
atcggcatcgtcaccgccgcgctggcctcgggctttgcgtggcgcgagcaaggcatcgat
ctcgtcaccgagaccgagctgttcgccaccgcgcccaccacgcgccgccgcaacaagaag
caggaacaggtcagcgacgtcgaggcgctgatcaaggatctttcggagctcaacgtcggc
gacccggtggtccacaccgcgcacggcatcggccgttaccgcggcctcatgcacatggac
ctgggccagggcgtcgacgccgagggcaagccgctgttgcaggaaatgctgcacctggag
tacgccgacaaggccacgctctacgtacccgtgtcgcagctgcaccagatcagccgctac
accggcgtgagcgccgacgaggccccgctgcaccggcttggctccggccaatgggagaaa
gccaagcgcaaggccgccgagcaggtgcgcgactcggccgccgagctgctcaacatctac
gcccgccgcgccgcgcgtgaaggccatgccttccgctactcggctgccgactacgaggtg
ttcgccaacgacttcggcttccaggaaaccgccgaccagaaggcggcgatccacgccgtg
gtgcaggacatgatctcgccccagccgatggaccgcctggtctgcggtgacgtgggcttc
ggcaagaccgaggtcgcgctgcgcgccgccttcatcgcgatcaccggcggcaagcaggtg
gcgtttcttgcgcccaccacgctcctggccgagcagcactaccagacgctggtcgaccgc
ttcgccaagtggccggtgaaggtggcggaaatgagccgcttccgctcggccaaggaaatc
acggccgccgcgaaggggctggccgagggccagatcgacatcgtggtcggcacgcacaag
ctgctctcgcagtcggtcaagttcaagaacctgggcctgctcatcatcgacgaggagcac
cgcttcggcgtgcgccataaagaggcgatgaaggcgatgcgcgcagaggtcgacgtgctc
acgctcaccgccacgccgattccgcgcacgctgggcatggcgctggaaggcctgcgcgac
ctgagcgtgatcgccaccgcgccgcagcgtcgcctggcgatcaagaccttcgtgcgcaac
gagggaaccggcgtgatccgcgaagccgtgctgcgcgagttgaagcgtggcggacaggtc
tattttctgcacaacgaggtcgaaaccatcgagaaccgccgccagaagctcgaggaaata
ctgcccgaggcccgcatcgcggtggcccacggccagatgccagagcgcgagctggagcgc
gtgatgcgcgacttcgtggcgcagcgctacaacctcttgctgtgctcgaccatcatcgag
accggcatcgacgtgcccaccgccaacaccatcgtgatgagccgcgccgacaagttcggc
ctcgcgcagttgcaccagctgcgcggccgcgtcggacgctcgcaccaccaagcctatgcg
tacctgatggtgccggacaccgagggcctcaccaagcaggcggcgcagcggctcgatgcc
atccagcagatggaagagttgggctccggcttctacctcgcgatgcacgacctggaaatc
cgcggcacgggcgaagtgctcggcgagaaccagagcggcaacatgatggagatcggcttc
cagctctacaacgagatgctgagcgaagcggtgcgcgcgctcaaggccgggcaggagccc
gacctgctgtcgccgctgtcggtcacgaccgagatcaacctgcacgccccagcccttttg
cccgacgactactgcggcgacgtgcacctgcgcctgtcgttctacaagaagctggccacc
gccaagacgccagaccagatcgacacgctgcttgaggaaatcgtcgaccgcttcggcaag
ctgccgccgcaggcgcagacgctcatcgacacgcaccgcctgcgtgtgctcgcgcggccc
tacggcgtggtgaaggtcgatgcggcgccgggcatcatcaacatcaccttcaagaaggat
gcaccggtcgacggcatggccatcatccagctggtgcagaagaacaagcacatcaagctc
gccggcaacgagaagcttcgcatcgaacgcgaactcaaggagccgaaggaccgcgcgcag
atggtgcgcgacgtgctgcgcagcctcggtcaacccctcgtcaaggaacccgcccccgca
tga
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