Variovorax paradoxus EPS: Varpa_3379
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Entry
Varpa_3379 CDS
T01392
Name
(GenBank) TonB-dependent receptor plug
KO
K16092
vitamin B12 transporter
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_3379
Transporters [BR:
vpe02000
]
Other transporters
Pores ion channels [TC:
1
]
Varpa_3379
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TonB_dep_Rec_b-barrel
Plug
OMP_b-brl_3
Motif
Other DBs
NCBI-ProteinID:
ADU37564
UniProt:
E6UV52
LinkDB
All DBs
Position
complement(3640038..3642002)
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AA seq
654 aa
AA seq
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MISCVFNSRASRGRAPAPIRHRGLACLPLALASAFGGLALIQLPTLAHAQEKAAAATLGE
TVVTANRTPQPLSDLVGDVSIIDRQAIERSGATGVADVLARQPGIEITRNGGVGNNTSLY
IRGAETRFTAVYLDGVRIDSQSTGGAGWEGIPLAQIDRIEVLRGPAAAVYGSDAIGGVIQ
LFTKRGEEGVSPYAGVGFGSHGLRKIEGGVSGKSGLLDYSFGVAHEESKGFNVQPADKRT
PSKDGFTSPDRDGYRSTSGNLKLGLQITPDQRIDATLLQSSVEAGYDASVSFRTRPPIRF
RNDVSDNTLRTAGLTWSAKWNDIYSTRVQVTDSQSVYKTQPSFYRTETNLRGYLFQNEFR
FGPHLVTATLERREDALENAPTTSAKLFSQDRSQNALALGYGFVQGPHSLQLHVRRDKDS
EFGGKTTGSAAYGFAILPSLRFTASAGTAFRVPTLYQRFSEYGVATLQPEDSRNLELGLN
YAKDGTTAGIVVYRNRVRNLINFVGTATGCASTFGCYTNVARATLQGATLSASQRIGDVT
LRASFDVQDPKDTETGNLLARRAKRHGTLGADWRVAGWTLGAEVQASSQRYDDAANKIKL
GGYTLLNLSASTQIARDLNLIARIDNVGDKDYQYARLYANGGRTAYLGLKWTPQ
NT seq
1965 nt
NT seq
+upstream
nt +downstream
nt
atgatttcctgtgttttcaattcccgcgcctctcgcggtcgcgcgcctgcgcccattcgc
catcgcggcctcgcctgcctgccgcttgcgctggcctcggccttcggcggcctcgcactg
atccagttgcccacgcttgcgcacgcgcaggaaaaggcagcagcagccacgctgggcgaa
acggtggtcacggccaaccgcacgccgcagccgctgtcggacctggtgggcgacgtgtcc
atcatcgatcgccaggccatcgagcgcagcggcgcgaccggcgtggccgacgtgctggcc
cgccagcccggcatcgagatcacgcgcaacggcggcgtgggcaacaacaccagcctctac
atccgcggggccgagacgcgcttcacggctgtctacctggacggtgtgcgcatcgactcg
caatcgaccggcggcgctggctgggaaggcattccgctcgctcagatcgaccgcatcgaa
gtgctgcgcggcccggccgccgcggtttatggctccgacgccatcggtggcgtgatccag
ctcttcaccaagcgcggcgaagagggcgtgtcgccctacgcgggcgtcggtttcggcagc
cacggcctgcgcaagatcgaaggcggcgtgagcggcaagtcgggcctgctcgactattcg
ttcggcgtcgcgcacgaagagagcaagggtttcaacgtgcagcccgccgacaagcgcacg
ccctcgaaggacggcttcaccagccccgaccgcgacggctaccgcagcacctcgggcaac
ctgaagctgggcttgcagatcacgcccgaccagcgcatcgacgccaccttgctccagagc
agcgtcgaagccggctacgacgcctcggtcagcttcaggacccggccgccgatccgattc
aggaacgacgtctcggacaacacgctgcgcaccgccggcctcacctggtcggccaagtgg
aacgacatctacagcacccgcgtgcaggtgaccgactcgcaatcggtctacaagacgcag
ccttcgttctaccgcaccgaaaccaacctgcgcggctacctgttccagaacgaattccgc
ttcggcccgcacctggtgaccgccacgctggagcgccgcgaagacgcgctcgaaaacgca
cccaccacctcggccaagctgttctcgcaagaccgctcgcagaacgcgctcgcgctcggc
tacggcttcgtgcagggcccgcattcgctgcagctgcatgtgcgccgcgacaaggacagc
gagttcggcggcaagaccaccggcagcgccgcctacggcttcgccatcctgccgtcgctg
cgcttcaccgcctcggccggcaccgccttccgcgtgcccacgctctaccagcgcttcagc
gaatacggcgtggccacgctgcagcccgaagacagccgcaacctcgagctgggcctgaac
tacgccaaggacggcaccaccgccggcatcgtggtgtaccgcaaccgcgtgcgcaacctg
atcaacttcgtgggcaccgccacgggctgcgcctcgaccttcggctgctacaccaacgtg
gcccgcgccaccctgcagggcgcgacgctctcggccagccagcgcatcggcgacgtcacg
ctgcgtgcctcgttcgacgtgcaggaccccaaggacaccgagaccggcaacctgctcgca
cgccgcgccaagcgccacggcacgctgggcgctgactggcgcgtggccggctggacgctg
ggcgccgaagtgcaggcctcgagccagcgctacgacgacgcggccaacaagatcaagctc
ggcggctatacgctgctgaacctgtcggccagcacgcagatcgcacgggacctgaacctc
atcgcccgcatcgacaatgtcggcgacaaggactaccagtacgcacgcctctacgccaac
gggggccgcaccgcctacctcggcctcaagtggacaccgcagtaa
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