Variovorax paradoxus EPS: Varpa_3504
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Entry
Varpa_3504 CDS
T01392
Name
(GenBank) HhH-GPD family protein
KO
K01247
DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
Varpa_3504
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_3504
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
Varpa_3504
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
Varpa_3504
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HhH-GPD
DUF4909
HHH
Motif
Other DBs
NCBI-ProteinID:
ADU37688
LinkDB
All DBs
Position
complement(3780962..3781612)
Genome browser
AA seq
216 aa
AA seq
DB search
MPASKNPTVQIYTPDYWEEACKHLAKKDRVMKRLIPKFGTACLESRGDAFTTLARSVVGQ
QISVKAAQTVWDKFAVLPRKLTPANVLKLKVDDMRAAGLSARKIEYLVDLALHFDSGVVH
VDAWKDMADELIIEELVAIRGIGRWTAEMFLIFHLMRPNVLPVDDVGLLNGISVNYFSGD
PVSRSDARDVAVAWAPYCSVATWYIWRSLDPVPVAY
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcttccaaaaacccgaccgttcagatctacacgccggattattgggaagaggcc
tgcaagcacctggccaagaaagaccgcgtgatgaagcggttgattccgaagttcggcacc
gcatgtctcgaatcgcgcggcgacgccttcaccacgttggcgcgcagcgttgtcggccag
cagatctcggtgaaggccgcgcaaaccgtctgggacaagttcgcggtgctgccgcgcaag
ctgacgccggcgaacgtgctcaagctcaaggtcgacgacatgcgcgcggcgggcctctcg
gcgcgcaagatcgaatatttggtcgacctggccctgcatttcgactcgggcgtcgtgcac
gtcgatgcatggaaagacatggccgacgagctcatcatcgaagagctcgtggccattcgc
ggcatcggccgctggacggccgagatgttcctcatcttccacctcatgcgtccgaacgtg
ctgcctgtggatgatgtcgggctgctcaacggcatcagcgtcaattacttttcgggcgac
ccggtgagccgcagcgatgcccgcgacgttgccgtggcctgggccccgtattgcagcgtg
gcgacttggtatatttggcggtcgctggaccccgtgccggtcgcgtattga
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