Variovorax paradoxus EPS: Varpa_3708
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Entry
Varpa_3708 CDS
T01392
Name
(GenBank) pseudouridine synthase
KO
K06178
23S rRNA pseudouridine2605 synthase [EC:
5.4.99.22
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_3708
Enzymes [BR:
vpe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.22 23S rRNA pseudouridine2605 synthase
Varpa_3708
Ribosome biogenesis [BR:
vpe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Varpa_3708
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
S4
Prothymosin
Motif
Other DBs
NCBI-ProteinID:
ADU37892
UniProt:
E6V0U6
LinkDB
All DBs
Position
complement(3996164..3997969)
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AA seq
601 aa
AA seq
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MSPSDIDDAGNLPIAPESEKKEAPAPEQAADAGIDSAAPADGEAPKKRRPRKKKVVEAVA
DEAEVSPAVEQAEPVEPAVESPVAASEEAAPVAAARQERPAEEAPRGDQGDQGDQGDDED
EDEEPDEEEDDLDRARRAAEREQRNAPPTEPIRFSDVISGQFDADEESPEVPPLKRVLLP
EADSPKLHKVLAQAGLGSRLEMEALILQGRISVNNEPAHIGQRIQYGDQVKINGKPIRYR
IAPPPPRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSS
SGDLANQLMHPRFGLEREYAVRVLGALSSEEKQKLLDGVRLEDGMAQFGTIEEGGGEGSN
CWYRVTISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDIRALF
QASGGAAARPAAPQQRGPGGPEGGGRNGRNKKRRGNRNGGGQGQGQGQQQPREMRDDGRE
APIPNPLGDGRPPRGDRGGRANRGGGGGGNGGPPQQRRGNAGGNNRQGQGGGNRQQGDDR
QPSGANQPDPMKTSLGYIGADSFSRQRKEQRGGPGGRRTGGGGTSGGGGYGGPAGSRRRG
R
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atgagcccatctgacatcgacgacgcgggaaacctgccgatcgcgcctgaatccgagaag
aaagaggcgccggcgcctgagcaagctgcggatgctggcatcgactccgcagcgcctgcc
gatggcgaggctcccaagaagcggcgcccgcgcaagaagaaggtcgtcgaggctgtggcc
gatgaggccgaggtatctccagcagtcgagcaagccgagcctgttgagccggcagtcgag
tcgccagtggctgcatccgaagaagccgctcctgtagcagccgctcgccaagagcgtcct
gccgaagaggctccccgtggtgatcaaggcgaccagggcgaccagggtgacgatgaggac
gaagacgaagagcccgacgaggaagaagacgacctcgaccgtgcccgccgtgccgccgaa
cgcgagcaacgcaacgcgcccccgaccgagccgatccgcttctcggacgtcatctcgggc
cagttcgacgccgacgaggaaagccccgaggtgccgccgctcaagcgcgtgctgctgccc
gaggccgattcgcccaagctgcacaaggtgctcgcacaagccggcctgggttcgcggctc
gagatggaggcgctgatcctgcagggccgcatttccgtcaacaacgaacccgcccacatc
ggccagcgcatccagtacggcgaccaggtcaagatcaacggcaagccgatccgctaccgc
atcgcgccgccgccgccgcgcgtgatcgcgtaccacaagccggtcggcgaagtggtcacg
catgacgacccgcagaaccggcccaccgtgttccgcaagctcccgcggctgcagcagggc
aagtggcaatcggtcggtcggctcgacctgaacaccgaaggcctgctgctgttcagcagt
tccggtgatctggccaatcaactgatgcatccgcgcttcggcctggagcgcgagtacgcg
gtgcgcgtgctgggcgccctcagcagcgaagagaagcagaagctgctcgacggcgtgcgc
ctcgaagacggcatggcccagttcggcaccatcgaagagggcggcggcgaaggttccaac
tgctggtatcgcgtcaccatttccgaaggccgcaaccgcgaagtgcgccggctgttcgag
tcggtgggccatgcggtcagccggctgattcgcatccgctatggcgcgatggtgctgccg
cgcggtctgaagcgcggcgcctggatggaactcgacgagcgcgatatccgtgcgctgttc
caggcctcgggcggtgcggcggcccgccccgcggcgccgcagcaacgtggccctggcggt
cccgaaggcggtggccgcaacggacgcaacaagaagcgccgtggcaaccgcaatggcggc
ggccaaggtcaggggcaaggacaacagcaaccgcgcgagatgcgcgatgacgggcgcgag
gcgcccattccgaatccgctgggcgacggtcgtccgccgcgcggcgatcgcggtggccga
gccaaccgcggtggcggcggtggtggcaacggcggcccgccgcagcagcgccgtggcaat
gccggcggcaacaaccgccaggggcagggcggcggcaatcgccaacaaggcgacgatcgc
cagccgagcggcgccaaccagcccgatccgatgaagacctcgctgggctacatcggcgcc
gacagcttctcgcgccagcgcaaggagcagcgcggaggaccgggggggcgtcgcaccggc
ggcggtggtacctcgggcggtggtggctacggcgggccggcaggctcgcgccgacgcgga
cgctga
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