Variovorax paradoxus EPS: Varpa_4050
Help
Entry
Varpa_4050 CDS
T01392
Name
(GenBank) ABC transporter related protein
KO
K02052
putative spermidine/putrescine transport system ATP-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4050
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4050
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Mineral and organic ion transporters
Putative spermidine/putrescine transporter
Varpa_4050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
TOBE_2
AAA_21
Rad17
RsgA_GTPase
AAA_22
AAA_25
AAA_16
AAA
AAA_28
AAA_17
AAA_29
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
ADU38222
UniProt:
E6V541
LinkDB
All DBs
Position
4372348..4373373
Genome browser
AA seq
341 aa
AA seq
DB search
MNAVAPLPPAAVEIVALSKRYAPGTPAAVDAIDLRIASGSYCCLLGPSGCGKSTTLRMIA
GHESVTSGDILLDNRNITNLPAAARGTAMMFQSFALFPHLSATDNVAFSLKMKGVGKAER
QKRARDLLARVAMGHLAERKPGELSGGQQQRVALARALITEPRVLLLDEPLSALDPFLRI
QMRAELRRWQKELGLTFVHVTHSQEEAMALADTMVVMNHGVIEQVGSPHEIYNHPANEFV
ARFMGGHNVIDTLAGPIAVRNDHMRIAANSQADGLAAAITDVEYQGTYVLLGLVLEAAAP
ERRNVSVLLGEAAFLASPYAQGETVRLSWAEADARALAVAP
NT seq
1026 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccgtcgccccgctcccgcccgccgcggtcgagatcgtcgcgctcagcaagcgc
tacgcccccggcacgccggccgccgtcgacgccatcgatctgcgcatcgccagcggcagt
tattgctgcctgctggggccctcaggctgcggcaagagcaccacgctgcgcatgatcgcg
gggcatgaatcggtcaccagcggcgacatcctcctggacaaccgcaacatcaccaacctg
cccgccgccgcgcgcggcacggcgatgatgttccagagcttcgcgctgttcccgcacctc
tcggccaccgacaacgtggctttcagcctcaagatgaaaggcgtcggcaaggccgagcgc
cagaagcgtgcgcgcgacctgctggcgcgcgtcgcgatgggccacttggccgagcgcaag
ccgggcgagctctccggcggccagcagcagcgcgtggcgctggcgcgcgcgctcatcacc
gagccgcgcgtgctgctgctcgatgaaccgctgtcggcgctggacccgttcctgcgcatc
cagatgcgcgccgaactgcggcgctggcagaaggaactgggcctgaccttcgtgcacgtg
acgcactcgcaggaagaagccatggcgctggccgacacgatggtggtgatgaaccacggc
gtgatcgagcaggtcggctcgccgcacgagatctacaaccaccccgccaacgaattcgtg
gcgcgcttcatgggcggccacaacgtgatcgacacgctcgccgggccgattgcggtgcgc
aacgaccacatgcggatcgccgcgaactcgcaggccgatggcctggccgccgcgatcacc
gacgtcgaataccagggcacctacgtgctgctcggcctggtgttggaagccgccgcgccg
gagcgccgcaacgtgtcggtgctgctgggcgaagccgcctttctcgcgagcccctacgcg
caaggcgagacggttcgcctgtcgtgggccgaagccgacgcgcgcgcgctcgccgtggcg
ccgtag
DBGET
integrated database retrieval system