Variovorax paradoxus EPS: Varpa_4134
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Entry
Varpa_4134 CDS
T01392
Name
(GenBank) DNA mismatch repair protein MutS
KO
K03555
DNA mismatch repair protein MutS
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
Varpa_4134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_4134
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
Varpa_4134
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MutS_V
MutS_I
MutS_III
MutS_IV
MutS_II
MutS_C
Motif
Other DBs
NCBI-ProteinID:
ADU38304
UniProt:
E6V669
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Position
4461106..4463763
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AA seq
885 aa
AA seq
DB search
MKTTTAQPISPTSDLSGHTPMMAQYLGLKADHPDTLLFYRMGDFYELFWADAEKAARLLD
ITLTQRGQSAGQPVVMCGVPFHAVDTYLARLIKLGESVAICEQVGEVGASKGPVERKVMR
VVTPGTLTDSELLSDKSESLLLAVHAGTRNFCGLAWLSVTGAELRLAECPADALEAWIAR
IAPSELLYSAEVTPAFEQRLKAARTATPFTLSIRPAWQFDGGLGERKLSEQMGSNSLAAW
NAESLTNAHAAAAALLGYAEHTQGRALSHVQRLSVERDGDLIELPPTTRRNLELVQTLRG
EDSPTMFSLLDTCMTGMGSRLVKRWLLSPRRDRSEAQARLEAIAALQSTVLGGTAAPWRT
LREQLKNTSDVERIAARIALRQVRPRELLALRLALDKAEQLAPLLPASAPLLTRIAERLA
PPPGCADLLVSAIKPDPSALVRDGGVIATGHDAELDELRAISDNCDDFLLKLEISERERT
GISNLRVQFNRVHGFYIEVTQSALSKVPDNYRRRQTLKNAERFITPELKAFEDKALSAQD
RALAREKWLYEQLLDALQPSVHALTQLAGGIATLDALCALAERSHTLHWRAPTFVSHPCI
EIQQGRHPVVEARLAEKSSGGFIANDTQLGPQQRMQVITGPNMGGKSTYMRQVAIIVLLA
SIGSHVPAAACRLGPIDAIHTRIGAADDLANAQSTFMLEMTEAAQILHSATAQSLVLMDE
IGRGTSTFDGLALAAGIAAQLHDRSKAFTLFATHYFELTEFPATHHGAVNMHVSATEAGR
DIVFLHEMQPGPASKSYGIQVARLAGMPAAVVNHARQALEALESQHAQTRAQVDLFAPPP
VAETPLASAVESALAALDPDTMSPREALDALYALQKLNTRERSAA
NT seq
2658 nt
NT seq
+upstream
nt +downstream
nt
gtgaaaacgacgactgctcaacccatttcccccaccagcgacctctccgggcacacgccc
atgatggcgcagtacctgggcctcaaggcggaccatccggacaccctgctcttctaccgg
atgggcgatttctacgaactgttctgggccgatgccgaaaaggccgcgcgcttgctcgac
atcaccctcacccagcgcggccagtcggccggccagcccgtggtgatgtgcggcgtgcct
ttccatgcggtcgatacgtacctcgcgcggctcatcaagctgggcgaatcggtggccatc
tgcgagcaggtgggcgaggtcggcgcgagcaaggggccggtggagcgcaaggtgatgcgc
gtggtcacgcccggcacgctgaccgattcggaactgctcagcgacaagagcgaatcgctg
ttgctcgcggtgcatgcgggcacgcgcaatttctgcgggctcgcgtggctcagcgtgacg
ggtgccgaactgcggctggccgagtgcccggccgatgcgctcgaagcgtggatcgcgcgc
atcgcgccgagcgaactgctctacagcgccgaggtgacgccggctttcgagcaacgcctg
aaagccgctcgcaccgcaacgccgttcaccctctcgattcgccccgcgtggcagttcgac
ggaggcctgggcgagcgcaagctcagcgagcagatgggcagcaacagcctggccgcgtgg
aacgccgaatcgctcaccaatgcgcatgccgcggcggccgcgctgctgggctatgccgaa
cacacgcagggccgcgcgctttcgcacgtgcagcggctgtctgtcgagcgcgacggcgac
ctgatcgagctgccgcccaccacgcggcgcaacctcgaactggtgcagacgctgcgcggc
gaagactcgcccacgatgttctcgctgctcgacacctgcatgacgggcatgggcagccgg
ctcgtgaagcgctggctgctgtcgccacgtcgtgaccgcagtgaagcgcaggcgcggctc
gaggcgatcgccgcgctgcagtccaccgtgctcggcggtactgccgcgccatggcgcacg
ctgcgggagcaactgaagaacacgagcgacgtcgagcgcattgcggcgcgcatcgcgctg
cgccaggtgcgtccgcgcgagttgctggcgctgcgcctggcgctcgacaaggccgagcaa
ctggcaccgctgctgcctgcttccgctccgttgctgacacgcatcgccgagcggctcgcg
ccgccgccgggctgcgccgatctgctggtgagcgcgatcaagcccgacccgtcggcgctg
gtgcgcgacggcggcgtgatcgcgaccggccacgacgccgagctcgacgagctgcgcgcc
atcagcgacaactgcgacgactttctgctgaagctcgaaatcagcgaacgcgagcgcacc
ggcatcagcaacctgcgggtgcagttcaaccgggtgcacggcttctacatcgaggtgacg
caaagcgcgctctcgaaggtgcccgacaactaccgccgccgccagacgctgaagaacgcc
gagcgcttcatcacgcccgagctgaaggctttcgaagacaaggcgctgagcgcgcaagac
cgcgcgctggcccgcgagaagtggctctacgagcagctgctcgatgcactgcagccctcg
gtgcatgcgctcacgcaactggccggcggcatcgcgacgctcgatgcgctgtgcgcgctg
gccgagcgctcgcacacgctgcactggcgcgcaccgaccttcgtgtcgcacccgtgcatc
gagatccagcaggggcggcatccggtggtggaagcgcgcctcgccgaaaagtcgtcgggc
ggcttcatcgccaacgacacgcagctcggaccgcagcagcgcatgcaggtcatcaccggc
ccgaacatgggcggtaagtcgacgtacatgcggcaggtggcgatcatcgtgctgctcgcc
tccatcggctcgcacgtgccggcggcggcctgccggctcgggccgatcgatgcgatccac
acgcgcatcggcgcggcggacgacctggcgaatgcgcagtcgaccttcatgctggagatg
accgaggccgcgcagatcctgcacagtgccaccgcgcaatcgctggtgctgatggacgaa
atcggccgcggcaccagcaccttcgacgggctggcgctggccgcgggcatcgcggcgcag
ctgcacgaccgcagcaaggccttcacgctgttcgcgacccactacttcgagctgaccgag
tttccggccacgcaccacggcgcggtgaacatgcatgtgagcgcgaccgaggcaggccgc
gacatcgtgttcctgcacgaaatgcagcccggcccggccagcaagagctacggtattcaa
gtcgcgcggcttgccggcatgccggcggccgtggtcaaccatgcgcggcaggcgctcgaa
gcactcgaatcgcagcatgcgcagacgcgtgcacaggtcgacctgttcgcgccccctccg
gtggccgagacgccgctggccagcgccgtagaatccgcgctggccgcgctagaccccgac
accatgagcccgcgcgaggccctcgacgcgctctatgccctccaaaaactgaacacgcgt
gaacgcagtgccgcctga
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