Variovorax paradoxus EPS: Varpa_4164
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Entry
Varpa_4164 CDS
T01392
Name
(GenBank) pseudouridine synthase
KO
K06181
23S rRNA pseudouridine2457 synthase [EC:
5.4.99.20
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_4164
Enzymes [BR:
vpe01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.20 23S rRNA pseudouridine2457 synthase
Varpa_4164
Ribosome biogenesis [BR:
vpe03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
Varpa_4164
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_2
Motif
Other DBs
NCBI-ProteinID:
ADU38334
UniProt:
E6V738
LinkDB
All DBs
Position
4499000..4499548
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AA seq
182 aa
AA seq
DB search
MTFPNTSRLIRFNKPYGVLSQFTPEGRWRGLKDFIDIPDVYVAGRLDADSEGLLLLTNDG
QLQARIADPRFKMEKTYWVQVEGVPTEEALAALRQGVQLNDGLTRPARASLLDPPPDVWP
RQPPIRERKSIPTAWLELAISEGRNRQVRRMTAAVGLPTLRLIRAAIGPHTLDGLAPGTW
RE
NT seq
549 nt
NT seq
+upstream
nt +downstream
nt
atgactttcccaaatacttcccgcctcatccgcttcaacaagccctacggcgtcctcagc
cagttcacccccgagggccgatggcgtgggctgaaagatttcatcgacatccccgacgtc
tacgtcgccggccgcctcgatgccgacagcgaaggcctgctgctccttaccaacgacggc
cagctccaggcgcgcatcgccgatccgcgcttcaagatggagaagacctattgggtgcag
gtggagggtgtgccgaccgaagaggcgctcgccgcgctgcgccagggcgtgcaactcaac
gacggcctcacgcgccctgcccgcgccagcctgctcgatccgccgcccgatgtgtggccg
cggcaaccgccgattcgcgagcgcaagagtattccgaccgcatggctggagctggcgatc
agcgaaggccgcaaccggcaggtgcggcgcatgaccgccgctgtcgggctgcccacgctt
cgcctgatccgggccgccatcgggccgcacacgcttgatggattggcgcccggcacctgg
cgcgagtaa
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