Variovorax paradoxus EPS: Varpa_4256
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Entry
Varpa_4256 CDS
T01392
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Varpa_4256
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpe03019
]
Varpa_4256
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Varpa_4256
Messenger RNA biogenesis [BR:
vpe03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Varpa_4256
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
P-loop_SecA
CMS1
Motif
Other DBs
NCBI-ProteinID:
ADU38425
UniProt:
E6V873
LinkDB
All DBs
Position
4580277..4582094
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AA seq
605 aa
AA seq
DB search
MNFDELKLAPAILKAVHEHGYDTPTPIQAQAIPAVLEGHDLLGGAQTGTGKTAAFTLPML
HKLTMSRSATNKFGGVGIRALVLTPTRELAAQVEESVRTYGKYLQLDSTVIFGGVGMNPQ
ISKLKKGVDILVATPGRLLDLQQQGMLDLSQVQMLILDEADRMLDMGFIHDVKKILALVP
KEKQSLLFSATFSDEIRDLAATLLKNPQSIQVTPRNTTVQRITQVIHPVGRGKKKALLAH
IINENKWSQVLVFTRTKFGANSVAEFLTKNGIEAMALHGNKSQSARTQALAGFKSGDIRA
LVATDIAARGIDIDELPHVVNYEIPNVSEDYVHRIGRTGRAGSSGEAVSFVCLDEEGFMQ
EIERFTKQTIPVQIVEGYGPEDGERAEPIAMGRQTIWGGAGRPPSRDVMQAAAKAARTEM
LSRIRENKAGQGGGERAGGGGGGNGGGQRRGGGQGGGGGQGRNANGGGQGQGPRGQGARP
AQGRGPQGPARTPHHAPQHQQQNHLPHDERQPRHHGNSHSPTQANQVAHLRAEAVAGGDG
QPDPLRTSVDHMGGGRGRGRPGGGGGGYGGNRSGGGGRSGGGGGYGGGGGGNRSGGGGGG
RSFGR
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
atgaattttgatgaactgaagctggctcccgccatcttgaaggctgtgcacgagcacggt
tacgacacccccacccccatccaggcgcaagccatccccgccgttctcgaaggccacgac
ctgctcggcggcgcccagaccggcaccggcaagaccgcagccttcacgctgccgatgctg
cacaagctcaccatgagccgcagcgccaccaacaagttcggcggcgtcggcatccgcgcc
ctggtgctgacccccacccgcgaactcgcggcccaggtcgaggaatccgtccgtacctac
ggcaaatacctgcagctcgactcgaccgtgatcttcggcggcgtcggcatgaacccgcag
atcagcaagctcaagaagggcgtcgacatcctcgtggccacccccggccgcctgctcgac
ctgcagcagcaaggcatgctggacctgagccaggtccagatgctcatcctggacgaagcc
gaccgcatgctggacatgggcttcatccacgacgtgaagaagatcctcgcgctcgtgccc
aaggaaaagcagagcctgctgttctcggccaccttcagcgacgaaatccgcgacctcgcg
gccacgctcctgaagaacccgcagagcatccaggtcacgccgcgcaacaccacggtgcag
cgcatcacccaggtgatccaccccgtgggccgcggcaagaagaaggcgctgctcgcgcac
atcatcaacgagaacaagtggagccaggtgctcgtgttcacgcgcaccaagttcggcgcc
aacagcgtggccgaattcctcaccaagaacggcatcgaggcgatggcgctgcacggcaac
aagagccagagcgcccgcacgcaggccctggccggcttcaagagcggcgacattcgcgcg
ctggtggctaccgacattgcggcccgcggcatcgacatcgacgagctgccgcacgtcgtg
aactacgaaatcccgaacgtcagcgaagactacgtgcaccgcatcggccgcaccggccgc
gccggttcgagcggcgaggccgtgagcttcgtgtgcctggacgaagaaggcttcatgcag
gaaatcgaacgcttcaccaagcagacgattccagtgcagatcgtcgagggctacggtcct
gaagacggcgaacgcgccgagccgatcgccatgggtcgccagacgatctggggcggtgcc
ggccgtccgccgagccgcgacgtgatgcaggcggccgccaaggctgcgcgcaccgaaatg
ctgtcgcgcatccgcgagaacaaggccggccaaggcggcggtgaacgcgctggcggtggt
ggtggcggcaacggcggcggtcaacgccgtggtggcggccaaggtggtggcggtggtcaa
ggccgcaacgccaatggcggtggtcaaggccagggcccgcgcggccagggcgcacgtccg
gcgcaaggccgtggcccgcaaggaccggcacgcacgccgcaccacgcaccccagcatcaa
caacagaaccatctgccgcacgacgagcgccaaccgcgccatcacggcaacagccacagc
ccgacgcaagccaaccaggtcgcgcacctgcgtgccgaagcggtcgccggtggcgacggc
cagccggatccgttgcgcacgagcgtcgaccacatgggtggcggacgcggtcgcggccgc
ccgggtggcggtggtggtggctacggcggcaatcgctcgggcggcggtggccgttcgggt
ggtggcggtggttacggcggcggtggcggtggcaaccgttccggcggtggcggcggtggc
cgctccttcgggcgctga
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