Variovorax paradoxus EPS: Varpa_4307
Help
Entry
Varpa_4307 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
vpe04146
Peroxisome
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_4307
00071 Fatty acid degradation
Varpa_4307
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Varpa_4307
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4307
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_4307
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_4307
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_4307
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Varpa_4307
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_4307
Exosomal proteins of breast cancer cells
Varpa_4307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADU38476
UniProt:
E6V961
LinkDB
All DBs
Position
4632419..4634035
Genome browser
AA seq
538 aa
AA seq
DB search
MPAVRPAPTPQPSPSIARISRIALGDVLHRSARRFGARTALIDGAHRMTYSELDAASNRF
AHHLLGLGLPSGERVGMLCNNSIQMVVAMLGIQKAGMVWVPINTALAVDAIGYILAHAEI
RHIVIDTALHAKPALRDLLQDQGVAPMLCVLDGDAPPEGIPTVAEAIATGAATLPDVDID
STQLALIMYTSGTTGRQKGVMHSHASVHSVLLSNMVEWGSSPERCDVWSSVLPLFHCGQH
TVLMSALAVGGALVIFRGFDPGAVLEAIERHRITVVVGLPMMYGALLAHPQRAARDLSSL
RLCVYAMAPMSRTLLLHLLDEFCQNFALVSGQTEMYPGATIFEVHEQRQRFGSYWGVGTL
VNEVAVMGDGGELLGANQVGEIVFRGPNVMLGYYKDPEATANAQRFGWHHSGDLGKLDDD
GQLIFLDRLKDMVKSGGENVPSLKVEEVLLRHPAVLNAAVVGLPHDHWGEAITAFVTRRP
DAAAELTAADLAAHCREHLGGFEVPKEIVFLPALPMTSTGKIQKFELRQAHQEHYRRG
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagtccgccccgcgcccacacctcagccatccccctccattgcacgcatctcg
cgcatcgcgctgggcgatgtgctccaccgttccgcgcgtcgcttcggcgcgcgcaccgcg
ttgatcgacggggcgcaccgcatgacctacagcgagctcgacgccgcatcgaaccgcttc
gcgcaccacctgctgggcctcggccttccgagcggggagcgcgtgggcatgctgtgcaac
aactcgatccagatggtcgtcgcgatgctcggcatccagaaggccggaatggtgtgggtg
ccgatcaacaccgcgctcgcggtcgatgccatcggctacatcctcgcgcatgcggagata
cgccacatcgtgatcgacacggccctgcacgccaagcccgcgctgcgcgatctgctgcag
gaccaaggcgtcgcgccgatgctctgcgtgctcgatggcgatgcgccgcccgaggggatt
cccaccgtcgcggaagcgatcgctacgggcgccgccacgctgcccgacgtggacatcgac
agcacgcagcttgcgctcatcatgtacacgagcggcaccaccggccggcagaaaggcgtg
atgcattcgcacgcctcggtgcactcggtgctgctgagcaacatggtcgagtggggcagc
agccccgagcgctgcgacgtgtggagcagcgtgctgccgctctttcattgcggccagcac
acggtgctgatgtcggcgctcgcggtcggcggcgcgctcgtcatctttcgcggcttcgat
cccggcgcggtgctcgaagccatcgagcgccaccgcatcaccgtcgtggtcggcctgccg
atgatgtacggcgcgctgctcgcgcatccgcagcgcgcggcgcgcgacctctcgagcctg
cgcctgtgcgtctacgcgatggcgccgatgtcccgcacgctgctgctgcacctgctcgac
gagttctgccagaacttcgcattggtctccggccagaccgagatgtaccccggcgccacc
atcttcgaggtgcacgagcagcgacagcgcttcggctcctactggggcgtgggcacgctg
gtgaacgaggtcgcggtgatgggcgacggcggcgagctgctcggcgcgaaccaggtcggc
gaaatcgtctttcgcggtcccaacgtgatgctcggctactacaaggaccccgaggcgacg
gcgaacgcgcagcgcttcggctggcaccactcgggcgacctcggcaagctcgacgacgac
ggccagttgatcttcctcgaccggctgaaggacatggtgaagtcgggcggcgaaaacgtg
ccatcgctcaaggtcgaggaggtgttgctgcggcatcccgccgtgctcaatgcggcggtg
gtcgggctgccgcacgaccactggggcgaagccatcaccgccttcgtcacgcggcggccc
gatgcggcggcggagctcaccgcggcggatctcgccgcgcattgcagggaacacctcggc
ggcttcgaggtgcccaaggaaatcgtcttcctgcccgcgctgccgatgacctcgaccgga
aagatccagaagttcgaactgcgccaggcgcaccaggaacactatcggcgcggctga
DBGET
integrated database retrieval system
