Variovorax paradoxus EPS: Varpa_4341
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Entry
Varpa_4341 CDS
T01392
Name
(GenBank) extracellular solute-binding protein family 5
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4341
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4341
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Varpa_4341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
ADU38510
UniProt:
E6V995
LinkDB
All DBs
Position
complement(4705367..4706860)
Genome browser
AA seq
497 aa
AA seq
DB search
MLKRRTLMGTAMAAAIPGAFLPLAQAQTGKNTLNIGMPLEPPGLDPTAGAASAIAEITQY
NIFETLTKVNADGSVTPMLAESWSSSPDMKTFVFKLRKGVRFENGQPFNAATVKFSFDRA
GGAKSTNKDKRFFSEIGTVVLDEYTVGVNSTLSNPDLPFMLGQSTACIVEPKSAETNATA
PVGTGPYKLAAWQRGASCTLAKSPTYRDPGLAKVEKFVFRFMSDTAAQTAALMANDIDIF
PRAGTRSVAQFKGNPRFQVLEVGTRGKVILTINNRKKPLDDVRVRRAILAALDRNTIIQG
AADGFGKPIGSHYAMGAPGFIDTTAMNPYDIEKAKRLLAEAGVKTPLELRLTLPPPSYAR
QGGEMIAAQLAQIGIHVKIQNVEWAQWLSGTFGGAHDFDLTMVAHVEPFDLVKYTEPDYY
WGYDSKKFRDTFVAIQNEENKKRRADLLADAQRQLATDAVNGFLYQAVFPTIARKEVKGL
WASMPIVVNDLAAISWS
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgttgaagcgacgcaccctgatgggcaccgccatggccgcggcaatcccgggcgccttt
ctcccgctggcacaggcgcagacgggcaagaacacgttgaacatcggcatgccgctggaa
ccgccgggcctggacccgaccgccggtgccgcgtcggccatcgccgagatcacgcaatac
aacatcttcgagacgctcaccaaggtcaacgccgatggctcggtcacgccgatgctggcc
gagagctggtcgtcgtcgcccgacatgaagaccttcgtcttcaagctgcgaaagggcgtg
cgcttcgagaacgggcaacccttcaacgccgccaccgtcaagttctcgttcgaccgcgca
ggcggcgccaagagcacgaacaaggacaagcgcttcttcagcgagatcggcaccgtggtg
ctcgacgagtacacggtgggcgtgaacagcacgctgtcgaaccccgacctcccgttcatg
ctgggccagtccacggcctgcatcgtcgagcccaagagcgccgagacgaatgcgaccgcg
cccgtcggcaccggcccctacaagctcgccgcgtggcagcgcggcgcctcgtgcaccctg
gcgaagtcgccgacgtaccgcgacccgggccttgcgaaggtcgagaagttcgtcttccgc
ttcatgtccgacacggccgcgcagaccgcggcactgatggccaacgacatcgacatcttc
ccgcgcgcgggcacccgctcggtggcgcagttcaagggcaacccgcgcttccaggtgctg
gaggtcggcacgcgcggcaaggtgatcctgaccatcaacaaccgcaagaagccgctggac
gacgtgcgcgtgcgccgcgcgatcctggcggcgctggaccgcaacaccatcatccagggc
gcggccgacggcttcggcaagcccatcggcagccattacgcgatgggcgcgccgggcttc
atcgacacgactgcgatgaacccctacgacatcgagaaggccaagcgcctgctggccgaa
gccggcgtgaagacgccgctcgagttgcgcctgacgctgccgccgccttcgtacgcacgg
cagggcggcgagatgatcgcggcgcaactggcgcagatcggcatccacgtgaagatccag
aacgtcgagtgggcgcagtggctgagcggcaccttcggcggcgcgcacgacttcgacttg
acgatggttgcgcacgtcgaacccttcgacctggtgaagtacaccgagcccgactattac
tggggctacgactcgaagaagttccgcgacacattcgtcgcgatccagaacgaggagaac
aagaagcgccgcgccgacctgctggccgacgcgcagcggcaacttgcgaccgacgcggtc
aacggctttctctaccaggcggtgtttcccaccatcgcgcgcaaggaggtcaagggcctg
tgggcgagcatgccgatcgtggtgaacgacttggccgcgatttcctggagctga
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