Variovorax paradoxus EPS: Varpa_4426
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Entry
Varpa_4426 CDS
T01392
Name
(GenBank) deoxyribodipyrimidine photolyase-related protein
KO
K06876
(6-4)DNA photolyase [EC:
4.1.99.13
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_4426
Enzymes [BR:
vpe01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.13 (6-4)DNA photolyase
Varpa_4426
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
Direct repair
Varpa_4426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DPRP
SMN_YG-box
Motif
Other DBs
NCBI-ProteinID:
ADU38594
UniProt:
E6VB64
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All DBs
Position
4800917..4802458
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AA seq
513 aa
AA seq
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MPVRNLVVVLGDQLSLSSVAFDGFDAAQDRVWMAEVREESEHVPSTQMRTALFLSAMRHF
AEAITARGMPIDYLKLGAHDFASIEAALTHALSHHRPRAVVMIEAGEWRLEQTIARVCQA
AQVRFAVRDDLHFMASRAEFSEHAHGKRRLVMEDFYRRMRLKHEVLLDARGQPEGGQWNF
DHDNRNAFGRNGPGMLPPPPSFAPDAITREVLADVETHFAGHYGSAAQFDWPVTREQALV
AMNDFMAHRLQDFGRFQDAMWTDEPVLYHGLLSSSLNLKLLDPREVIDAAVAQWRSGVAP
LESVEGFVRQILGWREFMRGVYWWRMPKLAAANALNHHEDLPGWYWTGDVGMNCMKQAIG
QTLQRGHAHHIQRLMVTGNFALTFGVAPAQVHAWYLSVYVDAVEWVELPNTVGMSLYADG
ARFVTKPYAAGGAYIRRMSNYCDGCRYKPGTRSGEGACPMTVMYWDFVARHARMLENNPR
TTVMTHNLRRFGTDELADIRRTAQQMRERPQLL
NT seq
1542 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgttcgcaacctcgtcgtggtcctgggggaccaattgagcctctccagtgtggca
ttcgatggcttcgacgcggcgcaagaccgcgtgtggatggccgaggtgcgcgaggagtcc
gagcatgtgccgagcacgcagatgcgcacggccctcttcctgtctgcgatgcgccacttt
gcagaggcgatcaccgcacgcggcatgcccatcgactacctgaagctgggcgcgcacgat
ttcgcatcgatcgaggccgcgttgacgcacgcgctgtcgcaccatcgcccccgcgcggtc
gtgatgatcgaggcgggcgaatggcgtctcgaacagacgatcgcaagggtgtgccaggcc
gcgcaggtgcggttcgcggttcgcgacgacctgcacttcatggcctcgcgtgccgagttc
tccgagcacgcgcacggaaaacgccgcctcgtgatggaagacttctaccgccgcatgcgg
ctcaagcacgaagtgctgctcgatgcgcgcgggcagcccgaaggcgggcagtggaatttc
gaccacgacaaccgcaacgccttcgggcgcaacgggccgggcatgctgccgccgccgccc
tccttcgcgcccgacgcgatcacgcgcgaggtgttggccgatgtcgaaacgcacttcgct
ggccactacggcagcgccgcgcagttcgactggccggtgacgcgcgagcaggcgctcgtc
gccatgaacgacttcatggcccacaggctgcaggacttcggacgcttccaggacgcgatg
tggaccgacgagccggtgctctatcacgggctgctgtcgtcgtcgctcaacctcaagctg
ctcgatccgcgcgaggtgatcgatgcggccgtcgcgcagtggcgctcgggagtcgcgccg
ctggaatcggtcgaagggttcgtgcggcagatcctcggatggcgcgagttcatgcgcggg
gtgtactggtggcgcatgccgaagctggccgctgccaacgcactgaatcatcacgaagac
ctgcccggctggtactggacgggcgacgtcggcatgaactgcatgaagcaggcgatcggc
cagaccttgcaacgcggccatgcgcaccacatccagcggctgatggtcacgggcaacttc
gcgctcaccttcggcgtcgctcctgcgcaggtgcatgcgtggtacctgtcggtgtatgtc
gatgcggtggagtgggtcgagctgccgaacacggtgggcatgtcgctctacgccgatggc
gcacgcttcgtgaccaagccctatgccgccggcggcgcctacatccgccgaatgagcaac
tactgcgacggctgccgctacaaaccgggcacccgcagcggcgaaggcgcctgcccgatg
acggtgatgtactgggacttcgtggcacgccatgcgcgcatgctcgagaacaacccgcgc
acgacggtgatgacgcacaacctgcggcgattcggcaccgacgagcttgcggacatacgg
cgcacggcgcagcaaatgcgtgagcggccgcagttgctgtag
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