Variovorax paradoxus EPS: Varpa_4437
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Entry
Varpa_4437 CDS
T01392
Name
(GenBank) extracellular solute-binding protein family 5
KO
K02035
peptide/nickel transport system substrate-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4437
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_4437
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
Peptide and nickel transporters
Peptides/nickel transporter
Varpa_4437
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SBP_bac_5
Motif
Other DBs
NCBI-ProteinID:
ADU38605
UniProt:
E6VB75
LinkDB
All DBs
Position
4812935..4814533
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AA seq
532 aa
AA seq
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MSLPRFTRRATLLSAASVAASTLLPLPASAADEPKRGGTLVIGSTQTPRHLNGAVQSGIA
TAMPSTQIFASPLRFDDKWNPQPYLAESWKLADDGKSLTLKLRKDAVFHDGKPVTSADVA
FSVMAIKANHPFTTMLGPVEKVETPDAQTAIIRMSVPHPAIVLAMSPALCPILPKHIYGD
GQDLKNHPRNTTDVVGSGPFRVTEFKPAQRIVLERFDKFFLAGKPYLDKVIVNVTPDMAS
LMLGLERGDIQMLPFATLPTDLRRMATDPKVSLTPKGYDGIGALNWLAFNTAKKPLSDVQ
VRKAIATAIDKNFIAKALMGGFATVSDGPLVAASPFAVNDLVRYPLDLKKAAEMLDAAGY
KAGANGERFKLTIDYLPGADDQQKNVAEYIRGQLKKVGITVEVRASADFPAWAKRLASHD
FDMSMDLVFNWGDPIIGVHRTYLSTNIKPIVWTNTQSYANPKVDELLNTAGGLIDATQRK
AYYATFQKIVTDDLPIEFINQVPYHTIASKKLGNVPATIWGPLSPMDEVYFK
NT seq
1599 nt
NT seq
+upstream
nt +downstream
nt
atgtcccttccccgtttcacgcgccgtgccaccctgctctcggccgcctcggtggccgcg
agcacgctgctcccgctgcccgcatcggccgctgatgaacccaagcgcggcggcacgctg
gtgatcggcagcacgcagacgccacggcacctgaacggcgcggtgcagtcgggcattgcg
accgcgatgccttccacgcagatcttcgcaagcccgctgcgcttcgacgacaagtggaac
ccgcagccgtacctggccgaatcgtggaagctcgccgacgacggcaagtcgctcacgctc
aagctgcgcaaggacgcggtgttccatgacggcaagccggtcacctcggccgacgtggcg
ttctcggtgatggccatcaaggcgaaccatccgttcaccaccatgctcggcccggtcgag
aaggtggagacgcccgatgcgcaaacggccatcatccgcatgagcgtgccgcacccggcc
atcgtgctggcgatgtcgccggcgctgtgccccattcttcccaagcacatctacggcgac
gggcaggacctgaagaaccatccgcgcaacacgaccgacgtggtgggctcgggcccgttc
cgcgtgacggagttcaagccggcgcagcgcatcgtgctggagcgcttcgacaagttcttc
ctggccggcaagccctacctggacaaggtgatcgtcaacgtcacgcccgacatggcgagc
ctcatgctcggcctggagcgcggcgacatccagatgctgcccttcgccacgctgcccacc
gacctgcgccgcatggcgaccgacccgaaggtgtcgctcacgcccaagggctacgacggc
atcggcgcgctcaactggctggccttcaacacggcgaagaagccgctctcggacgtgcag
gtgcgcaaggccatcgcgacggccatcgacaagaacttcatcgccaaggcgctcatgggc
ggcttcgcgaccgtctccgacggcccgctggtggccgcgagccccttcgcggtgaacgac
ctcgtgcgctatccgctcgacctgaagaaggccgccgagatgctcgatgcggcgggctac
aaggccggcgcgaacggcgagcgcttcaagctcaccatcgactacctgccgggcgccgac
gaccagcagaagaacgtggccgaatacatccgcggccagctcaagaaggtgggcatcacg
gtggaggtacgcgcctcggccgactttccggcatgggccaagcgcctggcctcgcacgac
ttcgacatgtcgatggacctggtgttcaactggggcgacccgatcatcggcgtgcaccgc
acgtacctgtcgaccaacatcaagccgatcgtgtggaccaacacgcagtcgtatgccaac
ccgaaggtcgacgagctgctcaataccgccggcggcctgatcgacgcgacccagcgcaag
gcctactacgcgaccttccagaagatcgtgacggacgacctgccgatcgagttcatcaac
caggtgccctaccacaccatcgcgagcaagaagctgggcaacgtgcccgccaccatctgg
gggccgctctcgccgatggacgaggtctacttcaagtag
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