Variovorax paradoxus EPS: Varpa_4516
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Entry
Varpa_4516 CDS
T01392
Name
(GenBank) rhamnosyltransferase
KO
K12990
rhamnosyltransferase [EC:2.4.1.-]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_4516
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
vpe01005
]
Varpa_4516
Lipopolysaccharide biosynthesis proteins [BR:
vpe01005
]
O-antigen repeat unit
Varpa_4516
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glycos_transf_2
Glyco_tranf_2_3
HNH_3
Motif
Other DBs
NCBI-ProteinID:
ADU38683
UniProt:
E6UV89
LinkDB
All DBs
Position
complement(4899227..4900198)
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AA seq
323 aa
AA seq
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MSVPFGAVVVTYFPTDEQVANLHSLAASCPRLCVVDNTPQVDGWHPALIEAGVPVLHNGN
RGGIAGAFNCGIVDLEARGAELFFLLDQDSKLPPGYFDAMCEAAMVARGRAGEGERGEDA
AFLIGPLVHDTNLDALIPQFGLEGKRVYQFDLRRPFTEPLMRCAFMISSGSLISRGAWAK
VGRFDERYVIDHVDTDYCMRALGREVPLYLNPHVVLRHQIGDIQARSLFGWKIHFINYPA
ARRYYIARNALDLSRAHVRAFPAILFVNVYTLKQILPMLMFERDRLKKTIALVLGCFDGL
FGRLGGLIEAHPRVGKYLMSRSE
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtcccgttcggtgccgtcgtcgtcacctatttcccgaccgacgagcaagtggcg
aacctgcattcgctggccgcctcatgcccgcgcctctgtgtggtcgacaacacgccgcag
gtggacgggtggcatccggcgctcatcgaggcgggcgtcccggtgctgcacaacggcaac
cgcggcggcatcgcgggcgccttcaactgcggcatcgtcgacctcgaagcgcggggcgcc
gaactcttcttcctgctcgatcaggattcgaagctgccgcccggctacttcgatgccatg
tgcgaggccgcgatggtggcccggggcagggcgggcgagggcgaacgcggggaagacgcg
gccttcctgatcggcccgctcgttcacgacacgaacctggacgcgctgatcccgcaattc
ggtcttgagggcaagcgcgtctaccagttcgaccttcggcggcccttcaccgagccgctg
atgcgctgcgccttcatgatctcttcgggctcgctgatttcgcgcggcgcctgggccaag
gtcggccggttcgacgagcgctacgtgatcgaccacgtggacaccgattactgcatgcgc
gccctcggccgcgaggtgccgctgtacctgaatccgcacgtcgtgctgcggcaccagatc
ggcgacatccaggcccggtcgctgttcggctggaagatccatttcatcaactatccggcc
gcgcggcgctactacatcgcgcgcaatgcgctggacctttcgcgggcgcatgtgcgcgcc
tttcccgcgattcttttcgtcaacgtctacacgctcaagcagatcctgcccatgctgatg
ttcgagcgcgatcgcctgaagaagaccatcgcgctcgtgctcggctgcttcgatggcctg
ttcgggcggctgggaggactcatcgaggcgcatccccgcgtgggcaaatacctgatgagt
cgcagcgagtga
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