Variovorax paradoxus EPS: Varpa_4542
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Entry
Varpa_4542 CDS
T01392
Name
(GenBank) peptidase M20
KO
K01439
succinyl-diaminopimelate desuccinylase [EC:
3.5.1.18
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00300
Lysine biosynthesis
vpe01100
Metabolic pathways
vpe01120
Microbial metabolism in diverse environments
vpe01230
Biosynthesis of amino acids
Module
vpe_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
Varpa_4542
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vpe01002
]
Varpa_4542
Enzymes [BR:
vpe01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.18 succinyl-diaminopimelate desuccinylase
Varpa_4542
Peptidases and inhibitors [BR:
vpe01002
]
Metallo peptidases
Family M20
Varpa_4542
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M20
M20_dimer
Motif
Other DBs
NCBI-ProteinID:
ADU38709
UniProt:
E6UVB5
LinkDB
All DBs
Position
4935165..4936391
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AA seq
408 aa
AA seq
DB search
MTDYAKLDAWIDAHFDEEVKFLQELVRVPTDTPPGNNAPHAERTAELLKDFGLDAEKHAV
PAQEVKDYGLESITNLIVRRKYGYGGLTVALNAHGDVVPPGEGWTHDPYGGEIADGSLYG
RAAAVSKSDFASFTFALRALEAVAKPAKGGVELHFTYDEEFGGILGPGWLLEKGLTKPDL
MIAAGFSYEVVTAHNGCLQMEVTVHGKMAHAAIPTTGVDALQGAVKILNALYAQNTLYQQ
VTSKVEGITHPYLNVGRIEGGTNTNVVPGKVMFKLDRRMIPEENPVEVEATIRKVIADAA
AESAGITVDIKRLLLANSMKPLAGNKPLVDAIQKHGGELFGEPVKAMGTPLYTDVRLYGE
AGIPGVIYGAGPRTVLESHAKRSDERVVLEDLRRATKVIARTLSDLLA
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaccgactacgccaagctcgacgcctggatcgacgcccacttcgacgaggaagtgaag
ttcctgcaggaactcgtgcgcgtgcccaccgacacgcctccgggcaacaacgcgccgcac
gccgagcgcaccgccgagctgctgaaggacttcggcctcgacgccgagaagcacgccgtg
cctgcgcaagaggtgaaggactacggcctcgaatcgatcaccaacctgatcgtgcgccgg
aagtacggctacggcggcctgacggtcgcgctcaatgcccacggcgacgtggtgcctccc
ggcgaaggctggacgcacgacccctacggcggcgagatcgccgacggcagcctctacggc
cgcgccgccgcggtgagcaagagcgacttcgcgagcttcaccttcgcgttgcgcgcgctc
gaagcggtcgccaagccggccaagggcggcgtcgagctgcacttcacctacgacgaagaa
ttcggcggcatcctcggcccgggctggctgctcgagaagggcctgaccaagcccgacctg
atgatcgcggccggcttcagctacgaagtcgtcaccgcccacaacggctgcctgcagatg
gaagtgacggtgcacggcaagatggcgcatgccgccattccgaccaccggcgtcgatgcg
cttcaaggcgcagtgaagatcctgaacgcgctctacgcgcagaacacgctctaccagcag
gtgacgtcgaaggtcgagggcatcacgcacccgtacctcaatgtcggccgcatcgaaggc
ggcaccaacaccaacgtcgtgcccggcaaggtcatgttcaagctcgaccgccgcatgatc
cccgaagagaacccggtcgaggtcgaggcgacgatccgcaaggtgatcgccgatgcggcc
gccgaaagcgcgggcatcacggtggacatcaagcgcctgctgctggccaactcgatgaag
ccgctcgcgggcaacaagccgctggtcgatgcgatccagaagcacggcggcgagctgttc
ggcgagccggtcaaggcgatgggcacgccgctctacaccgacgtgcgcctgtatggcgaa
gccggcatccccggcgtgatctacggtgccggcccgcgcaccgtgctcgagtcgcatgcc
aagcgcagcgacgagcgcgtggtgctcgaagacctgcgccgcgcgaccaaggtgatcgcg
cgcacgctgagcgacctgctggcctga
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