Variovorax paradoxus EPS: Varpa_4552
Help
Entry
Varpa_4552 CDS
T01392
Name
(GenBank) conserved repeat domain protein
Organism
vpe
Variovorax paradoxus EPS
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SpaA_4
Big_1
Invasin_D3
DUF11
SdrD_B
bMG3
Glyco_hydro_32C
Cadherin-like
Motif
Other DBs
NCBI-ProteinID:
ADU38718
UniProt:
E6UVC4
LinkDB
All DBs
Position
complement(4948311..4953653)
Genome browser
AA seq
1780 aa
AA seq
DB search
MTRKDSAGMAGQMTQFLFSGVRRARAVLALAALWTLLALLLTPAPARAAQATCTPQSGYN
SCVRVTYSGGDQSFTVPTGVTSVFIKAWGAGGGGPNSSYFPTQRGGGGGGFASGTLTVAA
GAALGVRVGEGGGVNDTSTTYGGGGAGGTSQATAIGSSGGGLSGVFATTTYTQGNARLIA
GGGGGSSSGGDVGTPAGGGGGGASGSDDGVAGSGRPGTQAAGGAAGSGGTCNLGAPTAGS
ALQGGNGGSTNENQNEGGGGGGGGYFGGGGGLCQGSSPNGMGGGGSGYIGGVTGTTSTAG
SISTSNNGGGAAAGTGDIHYATGIGTGGGGDASGGNGQVVIQFNAPLSIALSKTAPATVA
PGAAIAYVLSLTNTSPATSGTSMVVREQLPPGVIANTVSLGTGVNAVNCGAMPSAAGALL
NCAVTLSSGGIPINGGVRSFTLNATAPLVAAGTVLTNYANTNVAGSGTPATAPGAACVSS
ATVSCASAATTVVTGAAVLARSGERTVTDNQVANGSAQDVLEAIVRDAADNPVAGTVVTF
AATTGVAFNGGAVGAASTCTTAADGTCQVSATSTVPGTKSTVVRIPLGVLTGVFTANGQS
YGASPASYSFVAGTPSAAQSGLRVVTDNQVANGTAQDVLQVFVRDASGNPVGAGVVVNFG
ATPDVAFNGGAEGAAGSCTTGAAGTCQVTATTTEAGSYSTTAVTLGGAALGGTFTASGSS
YLPSPQTYRFLALPTVTIRAISTNGVGTFDFTGTNGLAAQSITTTVAGTAASAATQTLTA
ASTATTITESVPPAGYTLTAASCTGLPNGGTATFSGRTLTLNAAATAPGTNLVCTFTNTG
ATGTTSPPVPPTVSCLSNAAIFNTAYNGANGPPLTSGRDTVWESGEGAASGGPGTVSSWQ
RAYVGNKAPGAWIDSPFGNANWNSNYNPNHTGNVDVYHRFTFNMAASVNPATFSLKLDFY
SDNSVAEVFVNGVLQTVPGVPQGGGDPYNFRGFDPGRQASATLASNWRAGSNTVVVHIKS
GANAEGFLAQATTTAVCAPPTVVLSKTTTGGAGGPFNFTLSNTTQTNGVVSTVAAGTAVQ
VDGSTATAGTQPFSATTQGAAITIAEPAVPGWNLAGATCTDAGTPVGSLGSGADARTYTI
PAASVQYGRPLVCTFTNAASATVTVSKVSNGGVGPFGFTGTNGLAAQTITTVTAGTAVAG
AIQTLTAPGVATTITEDPLPANYALTGVSCTGLGAGGTATPDLPNRRVTLDAAATAAGSN
IACTFTNTFTPPFPRVQIVKTTTGGTGANLFGFALSGLSAATDSITVTGAGTANGAANLT
GTAGQLAKIKESAPAGWPANPVSASCLDASSATPTVPFGTLAGNELTIPAANMVAGANIT
CTFVNSFGFSVTGRVFLDNGTGSGVANDGRINGTEGGIAGVSVRLTNCAATVLSTATTDG
AGNYALDVPFATAANAPLCVEETNTASRLSTGASFGSVALPSGSAVAGGGTSYTYTRTGT
PDRIAFTWNGTGHAGLNFGDVDRNTFAADGAKSGMPGSTVSYAHTFIARTGGTLRFGISN
SVDTPAVSGWSGKIFADTGCTGAQQPGAALLYPPSAPLTVVAGQNVCIVMQEFIPANAAN
GSNNQSTLQASFDFTNAGPALSATYTVLDTTTVSNSALELKKEVRNVTQGAGFGVNNQAK
SGETLEYRVTYTNNGTTPISGMTVNDTTPQYTSFVAAQAGTTPASLTACSKNTPANALPA
PAVACAASQAAGGTGGLRWSFTGSLAPGATGAVLFSVKVD
NT seq
5343 nt
NT seq
+upstream
nt +downstream
nt
atgacaagaaaagattcggccggcatggcaggacagatgactcaattccttttttcgggc
gtcaggcgcgcgcgcgccgtgctggcgctcgccgcactttggacgctgctcgcactgctg
ctgacgccggcaccggcgcgggctgcgcaggccacgtgcacgccccaatcgggctacaac
tcgtgcgtgcgggtgacctactccggcggcgaccagagcttcaccgtgccgaccggcgtg
acctcggtgttcatcaaggcctggggcgccggcggcggcggacccaacagcagctacttc
cccacgcagcgcggcggtggcggcggcgggttcgcctccggcacgctgacggtggcggcg
ggcgccgcgctcggtgttcgcgtgggcgagggcggcggcgtcaacgatacgtcgacgacc
tacggcggcggcggcgcgggcggcacctcgcaggccacggcgatcggctcgagcggcggc
ggcctgtcgggcgtgttcgccaccacgacctacacgcagggcaacgcgcgcctcattgcc
ggcggcggcggtggctcgtcgtcgggcggggacgtgggcacgcctgccggcggcggcggc
gggggcgcgagcggaagcgacgacggcgtcgccggcagcgggcggcccggcacccaggcg
gcgggcggcgcggccggctcgggcggcacctgcaatctcggcgcaccgacggccggctcc
gcgctgcagggcggcaacggcggctccaccaacgagaaccagaacgaaggcggcggcggt
ggcggcggcggctacttcggcggcggcggcgggctgtgccagggaagttcgcccaacggc
atgggcggtggcggctccggctacatcggcggcgtcaccggcacgacctcgacggcggga
tcgatctcgacgtccaacaatggcggcggcgcggcggcgggcacgggcgacatccactac
gcgaccggcatcggcacgggcggtggcggcgacgccagcggcggcaacggccaggtggtg
atccagttcaatgcgccgctgtcgatcgcgctgagcaagacggcgccggcgacggtggcg
ccgggtgccgccatcgcctacgtcctgagcctgaccaacaccagccccgccaccagcggc
acgtcgatggtcgtgcgcgagcagcttccgccgggcgtgatcgccaacacggtgagcctg
ggcactggagtcaatgctgtgaattgcggcgcgatgccgagcgcagccggtgcgttgctg
aactgcgcggtgacgctgtcctccggtggcattccgatcaacggcggcgtgcgcagcttc
acgctcaatgccacggcgccgctggtggccgcaggcacggtgctcaccaactacgcgaac
accaacgtggcgggcagcggaacgccggccacggcgccgggcgcggcgtgcgtctccagc
gccacggtgagctgcgccagcgccgccaccaccgtggtgaccggggccgccgtgctggcg
cgttcgggcgagcgcactgtcaccgacaaccaggtggccaacggcagcgcgcaggacgtg
ctcgaagccatcgtgcgcgacgcggccgacaacccggtggccggcacggtggtgaccttc
gccgccaccacaggcgtggccttcaatggcggcgccgtgggcgcggcaagcacttgcacc
accgccgccgacggcacctgccaggtcagtgcgaccagcacggtgccgggtacgaagagc
accgtcgtaagaatcccgcttggcgtgttgacaggtgtcttcaccgcgaacggccagagc
tacggcgcgagccccgcgagctacagcttcgtggccggcacgccgagcgccgcccagtcg
ggcctgcgcgtggtcaccgacaaccaggtggccaacggcacagcgcaggacgtgctgcag
gttttcgtgcgcgacgcgagcggcaatccggtcggtgccggcgtggtcgtgaacttcggc
gccacgcccgacgtggccttcaacggcggcgccgagggcgcggcgggaagttgcaccacc
ggcgccgccggcacctgccaggtgacggcaacgaccaccgaggccgggagctacagcacc
accgcagtcaccctgggcggcgcggcactgggcggcaccttcacggccagcggcagcagc
tatctgccgagcccgcagacgtaccggttcctggcgctgccgaccgtgaccatccgcgcg
atctcgaccaacggcgtcggcactttcgatttcaccggcaccaacggcctggctgcgcag
agcatcaccactaccgtggccggcaccgccgccagcgcggcgacgcagacgctcaccgcc
gcgagcaccgccaccaccatcaccgaaagcgtgccgccggcgggctacacgctgacggcc
gcctcctgcacgggcctgcctaacggcggcaccgccacgttctcgggccgcacgctcacg
ctcaatgccgcggccacggcgcccggcaccaacctggtctgcaccttcaccaacaccggc
gccaccggcaccacctcgccgccggttccaccaacggtgagttgcctctcgaacgccgcg
atcttcaacaccgcctacaacggcgcgaacggaccgccgctcaccagcggccgcgacacg
gtgtgggaatcgggcgagggcgctgccagcggcggccccggcaccgtgagctcgtggcag
cgcgcctacgtgggcaacaaggcgcccggtgcgtggatcgactcgccgttcggcaacgcc
aactggaactcgaactacaacccgaaccacacgggcaacgtcgacgtctaccaccgcttc
accttcaacatggcggcctcggtgaacccggcgaccttctcgctgaagctggacttctat
tccgacaactcggtggccgaagtgttcgtcaacggcgtgctgcagaccgtgcccggcgtg
ccgcagggcggcggcgatccctacaacttccgggggttcgatccgggccggcaggcgagc
gcgacgctcgcgagcaactggcgcgccggcagcaacacggtggtggtgcacatcaagagc
ggagcgaacgccgaaggcttcctcgcgcaggcgaccaccaccgcggtctgcgcgccgccg
accgtggtgctgtcgaagaccaccaccggcggcgccggcggccccttcaacttcacgctg
agcaacaccacccagaccaacggcgtggtcagcaccgtggcagcgggcacggcggtgcag
gtcgacggcagcaccgcgaccgccggcacgcagcccttctcggccacgacgcagggcgcc
gcgatcaccatcgccgagccggcggtgccgggctggaaccttgcgggcgccacttgcacc
gatgccggcacgcccgtcggcagcctgggcagcggcgccgacgcgcgcacctacacgatc
cccgcggccagcgtgcagtacggccggccgctggtgtgcaccttcaccaacgccgcctcg
gccacggtgacggtcagcaaggtgagcaacggcggcgtcggcccgttcggcttcaccggc
accaacggcctcgcggcacagacgatcaccaccgtgaccgccggcaccgcggtcgcgggc
gcgatccagacgctgaccgcacccggcgtggccaccaccatcaccgaagacccgctgccc
gccaactacgcgctcaccggcgtgagctgcaccggcctcggcgcaggcggcaccgccacc
cccgacctgcccaaccgcagggtgacgctcgatgcagccgccaccgcggcgggcagcaac
atcgcctgcaccttcaccaacaccttcacgccgccgttcccccgggtgcagatcgtgaag
accaccaccggcggcaccggcgccaacctgttcggctttgcgctgagcgggctctcggcc
gccaccgacagcatcaccgtgaccggtgccggcaccgccaacggcgcggccaacctgacc
ggcaccgccggccaactggccaagatcaaggaaagcgcgcccgccggctggcccgccaac
ccggtcagcgcgagctgcctcgatgcttccagcgccacgcccaccgtgcccttcggcacg
ctcgcgggcaacgagctcacgattcccgcggccaacatggtggccggcgccaacatcacc
tgcaccttcgtcaacagcttcggcttcagcgtgacgggccgcgtgttcctcgacaacggc
acaggctcgggcgtggcgaacgacgggcgcatcaacggcaccgaaggcggcattgcgggc
gtgagcgtgcggctgaccaactgcgcggccaccgtgctctcgaccgccaccaccgacggc
gccggcaactacgcgctcgacgtgccctttgccactgccgccaatgcaccgctgtgcgtg
gaagagaccaacaccgcatcgcgcctgtcgaccggcgcctcgttcggcagcgtggcgctg
ccctcgggctcggcggtggcgggcggcggcacgagctacacctacacccgcaccggcacg
cccgaccgcatcgccttcacctggaacggcaccggccacgccggcctgaacttcggcgac
gtggaccgcaacaccttcgcggccgacggcgccaagagcggcatgcccggcagcaccgtg
agctacgcccacaccttcatcgcgcgcaccggcggcacgctgcgcttcggcatctcgaat
tcggtcgacacgccggcggtgagcggctggagcggcaagatctttgccgacaccggctgt
accggcgcgcagcagcccggcgccgcgctgctgtatccgccgtcggcaccgctcacggtg
gtggcggggcagaacgtctgcatcgtgatgcaggagttcattccggccaacgcggccaac
ggcagcaacaaccagagcacgctgcaggcgagcttcgatttcaccaacgccggccccgcg
ctgagcgcgacctacacggtgctggacaccaccaccgtgtcgaacagcgcgctggagctc
aagaaggaagtgcgcaacgtcacgcagggtgcgggcttcggcgtgaacaaccaggccaag
tcgggcgagaccctggaataccgcgtgacctacaccaacaacggaaccacgccgatctcc
ggcatgacggtcaacgacacgacgccgcagtacaccagcttcgtggccgcgcaggccggc
accacgccggcttcgctcaccgcctgcagcaagaacacgccggccaatgcgttgcctgcg
ccggctgtggcctgtgcggcctcgcaagcggcgggcggaaccggcgggctgcgctggtcc
ttcaccgggtcgctggcgccgggcgccaccggggcggtgctgttcagcgtgaaggtggac
tga
DBGET
integrated database retrieval system
