Variovorax paradoxus EPS: Varpa_4673
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Entry
Varpa_4673 CDS
T01392
Name
(GenBank) polysaccharide biosynthesis protein CapD
KO
K24300
UDP-N-acetylglucosamine 4,6-dehydratase [EC:
4.2.1.135
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00541
Biosynthesis of various nucleotide sugars
vpe00552
Teichoic acid biosynthesis
vpe01100
Metabolic pathways
vpe01250
Biosynthesis of nucleotide sugars
Module
vpe_M01009
UDP-QuiNAc biosynthesis, UDP-GlcNAc => UDP-QuiNAc
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
Varpa_4673
00552 Teichoic acid biosynthesis
Varpa_4673
Enzymes [BR:
vpe01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.135 UDP-N-acetylglucosamine 4,6-dehydratase (configuration-retaining)
Varpa_4673
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Ortholog
Paralog
GFIT
Motif
Pfam:
Polysacc_synt_2
Epimerase
GDP_Man_Dehyd
RmlD_sub_bind
3Beta_HSD
adh_short
NAD_binding_10
CoA_binding_3
Pyr_redox_2
PglD_N
C2185-like_N
KR
CoA_binding
AA_kinase
Motif
Other DBs
NCBI-ProteinID:
ADU38836
LinkDB
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Position
complement(5093625..5095574)
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AA seq
649 aa
AA seq
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MLALPRPAKRLLALAVDAALCVLCVWVAFSLRYEQWVTLRGVQWTAVGAAIVGALPLFIV
FGLYRAIFRYAGPAALMAIVRACTFFGIGYGLVFSVIGVSGVPRTVGFLMPMMLFLTVAS
SRMLARYWLGGMYMSALDRKALPQVVIYGAGGAGVQLAAALAQSREMSVRAFIDDARHLQ
GNTLHGLPIHSPDWLEHNAAKHGITDVLMAMPSSSRGRRAEILNQLLPLHLHVRTLPALA
DLANGRVQVHDLLEVDIEDLLGRDPVAPRGDLLHKNIRHQVVLVTGAGGSIGSELCRQIV
QLSPKTLLLVEMNEYALYGIHQELEALAPHIHVVPLLASVCDAARLREVMRAWHPDTVYH
AAAYKHVPLVEHNPIEGVRNNALGTLTAARVAMECKVRRFVLISTDKAVRPTNVMGASKR
LAEMTLQGLAQQKSGTCFSMVRFGNVLGSSGSVVPLFRRQIEAGGPITLTHADITRYFMT
IPEAAQLVIQASAMAEGGDVFVLDMGEPVRIIDLARRLVELSGRTVRDENSPDGDIELQI
TGLRPGEKLYEELLIGDNALQTSHPRVMKAHEPCLPEEELWRQFDVLTAALRNSDVPALK
RTLQQMLPGYRAHAEVVDWVHMERNRRSLTVVNCTEESANSELPMAVAL
NT seq
1950 nt
NT seq
+upstream
nt +downstream
nt
ttgcttgcgttgccccgccctgccaaacgcctgctggcgctggctgtcgatgcagcgctt
tgcgtcctgtgcgtatgggtggcgttcagccttcgttacgagcagtgggtaacccttcgc
ggagttcaatggacggcggtaggcgcggcgattgtcggcgcgctacccctcttcatcgtt
ttcgggctgtatagggccatcttccgttacgccggtcccgccgcattgatggccatcgtg
cgtgcctgcacgttcttcggcatcggctacgggctcgtgttttccgtgatcggcgtgagc
ggggttccgcggacggtcgggttcctcatgcccatgatgctgttcctgacagtggccagc
tcgcgcatgttggcgcgctactggttgggcggcatgtacatgagcgcgctcgaccggaag
gcattgccgcaagtggtgatctacggtgccggcggcgccggggtgcaactggctgccgca
ttggcccagagccgcgagatgtcggttcgtgccttcatcgacgacgccaggcatctccaa
ggcaacacccttcacgggctgcccatccattcgcccgattggctcgagcacaacgctgcg
aagcacggcattaccgatgtgctgatggcgatgccttcgtccagccgtgggcgccgggcg
gagatcctgaaccagttgctgcctctgcatcttcatgtgcggacgctcccggcactggcc
gatctggccaacggccgagtgcaggtccacgatctgctcgaggtcgacatcgaagacctc
ttggggcgtgacccggtcgcgccgagaggcgatttgctgcacaagaacatccgccatcaa
gtcgtgctggtcacgggagcgggcggttccatcggcagcgagctgtgccggcagatcgtg
cagctttcgcccaaaacgttgctgctggtggagatgaacgagtacgcgctctatggaatc
catcaggagctcgaagccttggcgccccacatccacgtggttcctctgctggcgtcggtg
tgcgacgcggcgcgtttgcgtgaagtgatgcgcgcctggcacccggacaccgtctatcac
gccgccgcctacaagcatgtgccgctggtcgagcacaacccgatcgaaggcgtgcgcaac
aacgcgctgggcacgctcacggcggcgcgggtcgccatggaatgcaaggtgcgccgcttc
gtgctcatcagcaccgacaaggcggtgcgcccgaccaacgtcatgggcgccagcaagcgg
ttggccgagatgactctgcaggggctcgcgcaacaaaaatcgggcacctgcttctcgatg
gttcgcttcggcaatgtgctgggctccagcggctcggtggttccgctgttccgccggcaa
atcgaagcgggcggcccgatcacgctgacgcatgcggacatcacgcgctacttcatgacc
attccagaggcggcgcaattggtcatccaggccagcgcaatggccgaaggcggcgatgtg
ttcgtgctcgacatgggcgagccggtgcgcatcatcgacctcgcgcgccgcctggttgaa
ctgtcgggacgcacggtgcgagacgagaactcgcccgatggcgacatcgaactccagatc
accggcctgcggcccggcgagaagctgtacgaggaactgctgatcggcgacaacgccctg
cagacctcgcacccgcgcgtgatgaaggcgcacgagccttgcctccccgaggaagagctt
tggcgccagttcgacgtattgaccgccgcgcttcgcaacagcgacgtgccggcgctcaag
cgaacgctgcagcagatgctgcccggctaccgcgctcacgcggaagtggtcgactgggtg
cacatggagcggaatcgcaggtcgttgactgttgtgaattgcaccgaagagagtgccaac
tcggaactgccgatggccgttgcactctga
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