Variovorax paradoxus EPS: Varpa_4912
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Entry
Varpa_4912 CDS
T01392
Name
(GenBank) pilus tip-associated protein
KO
K02674
type IV pilus assembly protein PilY1
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
vpe02044
]
Varpa_4912
02035 Bacterial motility proteins [BR:
vpe02035
]
Varpa_4912
Secretion system [BR:
vpe02044
]
Type II secretion system
Pilin secretion/fimbrial assembly protein
Varpa_4912
Bacterial motility proteins [BR:
vpe02035
]
Pilus system
Pilus assembly proteins
Varpa_4912
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
T4P_PilY1
Motif
Other DBs
NCBI-ProteinID:
ADU39072
UniProt:
E6V149
LinkDB
All DBs
Position
complement(5329799..5333620)
Genome browser
AA seq
1273 aa
AA seq
DB search
MTSAFCRPSTVVSSIGAIAAICLGLSSPAALATTAKLSDQPVFASSDVPGNLALALSVEY
PTAISVANLNDYADATEYLGYFDPRKCYTYTYVAPAVKDSAASASYFQPAGASTGTNKHS
CSGQWSGNFMNWATMQTIDPFRWALSGGYRSVDTTSETILEKGWGSAQGNITNFPLRGTD
QGGGHKLPKASISSVTPFGNWSNFNTSIWSRGNTMVFTGTGNPNGTGGDLKDVGAANDAK
KTDAIYQVYVRVKVCDTSAGAGGVEANCVKYGTNYKPEGLLQQNANKIRYGTFSFLNAGG
ISQQGGVMRAPMGFIGPTYPQPLSTAVVTNTRGEWDAATGIMNTNPDAVSATASGVVQSG
VMNYLNKFGQSAKNYMTYDNVSELYYAAVRYFENLGNVPEWTNSVAANVEGREAKLDGFP
AVTDWSGKDPISYSCQKNFILGIGDDHTHYDYNVGGSAVTSWRGNPATVAADSLNKADAW
TKNLQVMEGFKAPTPWWKTGGSDTTYYIAGLAYGAHVNDIRPDLAGMQNISTYWMDVMEY
QRAEDLNPYYLATKYGGFSVPANYDPATTTPLAQEWWNTSGDSIDMNGNKRLRPDNYFLA
GNAGQMVSGLRAAFTDIANAIKAYTTSFSLSTAQAASTGSASYASQYDSKGWTGVVTASK
LTFASDGTPSAAPVWTTSTTLEAQLANGGWDTARRVATWDGNKGVAFRAGSVTSAQLAAL
APAYASTTSSTDYLNYLRGDRKNEGTSTAAESTRALRSRSLLLGDIVNSKVMPVGPPATS
FSEKSNPGYTAFKTKWAARPTMVYVGANDGMLHAFNGALDGTNSGTEQFAYVPSALFQGP
NGTPQVDGLAQLGSPKYAHRYYVDATPLVFDIDLNNAGGASTTKGNGNGNGNGNGNGNGN
GNGNGNGNGNSTKWHSLLVGGLGKGGKSYYAIDVTDPANMDSETAVARKVKWEFTDATMG
YSYGAPMAVKTDKYGWVVILTSGYNNSDGKGYLYIVDPRTGALLEKMGTPTASNGLAQAS
AYVADHADNTADAVYAADLDGQLWRFDLTAAKGSSYPAPTLLATLTDASGNAQPVTTAPL
IEINPVTRKRFVLLGTGKLLDASDVNSKAPQSFYAIVDGTAGGFNAVTTPITRSQLTKVD
DVLKGISLSNTSPGWYLDLGVDTGVGWRLVSSPAAFNGIVAFSSLLTTGDACSPSGQSRV
YAINYGTGGSVLLPAGTAYQSFPSAVTDLRFVSVDGSTRIVVGTDGRPVPVKADLSKGIS
LRLLNWREVPAVN
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgacaagcgctttttgtcgtccatcgaccgtggtctccagcatcggggcgatcgcggcc
atctgcctgggcctgtcgtcgccggccgcgctggcgaccaccgccaagctgtcggaccag
cccgtgttcgcctcgtccgacgtgccgggaaatcttgcgctggcgctgtcggtggaatac
cccaccgcgatcagcgtggccaacctcaacgactacgccgacgccacggagtacctgggc
tacttcgatccgcgcaagtgctacacgtacacctacgtcgcgccggcggtgaaggacagc
gctgcatccgccagctacttccagccggccggcgcgtccaccggcaccaacaagcacagt
tgttcgggacagtggagcggcaacttcatgaactgggccacgatgcagaccatcgaccca
ttccgctgggcgctctcgggcggctatcgaagcgtggacaccacgagcgaaaccatcctg
gagaagggttggggctccgcccagggcaacatcaccaatttcccgctgcgcggcaccgat
cagggaggcgggcacaagctgccgaaggcatcgatttcctcggtcacgccgttcggcaac
tggagcaacttcaatacgagcatctggtcgcgcggcaacaccatggtgttcaccgggacg
ggcaaccccaacggcacgggaggcgacctgaaggatgtcggcgctgccaacgacgcgaag
aagacggacgccatctaccaggtctatgtgcgcgtcaaggtctgcgacacctcggccggt
gccggcggcgtggaggccaactgcgtcaagtacggcaccaactacaagcccgaaggcttg
ctgcagcagaacgccaacaagatccgctacggcaccttctcgttcctgaacgccggcggc
atctcgcagcagggcggcgtgatgcgcgcgccgatgggcttcatcggcccgacgtatccg
cagccgctgtccaccgcggtggtcaccaacacgcgcggcgagtgggatgccgccaccggc
atcatgaacaccaaccccgacgcggtgtcggccacggcgagcggcgtcgtgcagagcggg
gtgatgaactacctcaacaagttcggccagtccgccaagaactacatgacgtacgacaac
gtcagcgagctctactacgctgccgtgcggtacttcgagaacctgggcaacgtccctgaa
tggaccaactcggtggcggccaacgtggagggcagggaggccaagctcgacggttttccc
gcagtgaccgactggagcggcaaggaccccatttcctattcgtgccagaagaatttcatt
ctgggcatcggcgacgaccacacccactacgactacaacgtgggcggaagcgcggtgacg
agctggcgaggcaatcccgcgacggtcgccgcggactcgctgaacaaggcggatgcctgg
acgaagaacctgcaggtgatggaaggcttcaaggcgccgacgccgtggtggaagaccggc
ggcagcgatacgacctactacatcgccggcctggcctacggcgcgcacgtgaacgacatc
cgccccgatctggccggcatgcagaacatctccacctactggatggacgtcatggagtac
cagcgggccgaagacctgaacccgtactacctggcaaccaaatacggcggcttcagcgtg
cccgcgaactacgacccggccaccaccacgccgctcgcgcaggaatggtggaacacctcg
ggcgacagcatcgacatgaacggcaacaagcgcctgcggcccgacaactacttcctggcc
ggcaatgccgggcagatggtgagcggcctcagggcggcgttcaccgacatcgccaacgcc
atcaaggcctacaccacgtccttttcgctttccacggcgcaggcggcctccaccggcagc
gcctcctatgcatcgcagtacgactccaagggatggacgggcgtggtcaccgccagcaag
ctcaccttcgccagcgacggtacgccgtccgccgcacccgtctggaccaccagcaccacg
ctcgaagcccagttggccaatggcggctgggacacggcgcgccgcgtcgcgacatgggac
ggcaacaagggcgtggccttccgcgccggcagcgtgacgtcggcacaactggccgccctc
gcgcccgcctacgccagcaccacgagcagcaccgactacctcaactacctgcgcggcgat
cgcaagaacgaaggcacctcgacggcggccgaaagcacacgggcactgcgcagccggtcc
ctgctgctgggcgacatcgtcaattcgaaggtcatgcctgtcgggccgcccgcgaccagt
ttctcggagaagagcaacccgggctacacggccttcaagaccaagtgggccgcgcgcccc
accatggtctacgtcggtgccaacgacggcatgctgcatgcattcaatggcgccctcgac
ggcaccaactccgggaccgagcagttcgcctatgtgccgagcgccttgttccaggggccg
aacggcacgccgcaagtggatggactggcgcagcttggaagtcccaagtacgcccaccgc
tactacgtggatgcgacgccgctggtgttcgacatcgacctgaacaacgccggcggcgcc
tccaccaccaagggcaacggcaacggcaacggtaacggcaacggcaacggtaacggcaac
ggcaacggcaacggcaacggcaacggcaacagcaccaagtggcacagcctgctggtcggc
gggctgggcaagggcggcaagagctactacgccatcgacgtgaccgacccggcaaacatg
gacagcgaaaccgcggtggcacgcaaggtgaaatgggaattcaccgacgccaccatgggc
tacagctatggcgcacccatggccgtgaagacggataagtacggctgggtcgtgatcctc
acctcgggctacaacaacagcgacggcaagggctacctgtacatcgtcgatccgaggacc
ggtgcattgctcgagaagatgggaacgcccaccgcctccaacggtctcgcgcaggcgtcc
gcctacgtggccgaccatgccgacaacaccgcggatgccgtctatgcagcggatctcgac
gggcagctctggcgcttcgatctcaccgccgccaagggcagcagctatccggcgccgacc
ttgctggccacgctgaccgacgcatcgggcaacgcccaaccggtcaccaccgcgccgctg
atcgagatcaaccccgtcacacgcaagcgtttcgtgctgctcggtaccggcaagctgctg
gacgcctcggacgtgaattcgaaggcaccgcagtcgttctacgccatcgtggacggaacg
gcagggggcttcaatgcagtgaccacgcccatcacgcgcagccagctcacgaaggtggac
gatgtgctcaagggcatcagcctctcgaacacttcaccgggctggtatctggacctgggt
gtggacaccggtgtcggctggcgtcttgtgtccagcccggcggccttcaacggcatcgtg
gctttctccagcctgctgaccaccggcgatgcctgcagtccttcggggcagagccgggtc
tacgccatcaactacggaacggggggctcggtgctgctgcccgccggaaccgcctaccag
agcttcccgagcgccgtcaccgacctcagattcgtgagcgtggacgggtcgacccgcatc
gtcgtcggcaccgacgggaggccggtgcccgtgaaagccgatctgtccaagggcatctcg
ctgcgcctcctgaactggcgcgaagtcccggcggtgaactga
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