Variovorax paradoxus EPS: Varpa_4946
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Entry
Varpa_4946 CDS
T01392
Name
(GenBank) outer membrane autotransporter barrel domain protein
Organism
vpe
Variovorax paradoxus EPS
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Gene cluster
GFIT
Motif
Pfam:
Autotransporter
PATR
AC_1
ESPR
U79_P34
Motif
Other DBs
NCBI-ProteinID:
ADU39106
UniProt:
E6V227
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Position
complement(5367090..5370314)
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AA seq
1074 aa
AA seq
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MNTIFRVIWNSALALWTVASEFGRGHARSTSATRGVPLLAAAALAAASFSASAACTTDTA
AQTITCTGTDQTATVGAGLATPAGTAISIASGATVSTGNQAGISAGNAASIVVQSGAVVQ
NNATNKGTSPYGFIGANTIEVNDNSTITIEAGAAVTASGAGTSTEAINPVGSGNTITNHG
TVSSSHTAIWFQSNSGANTVVNTGTIIAGAGTNSTQTTVIGASGTMAIDFTNRGSLVGSL
AFAGASDALRWYTGASITGNISGGGGADLLTLNSDNNATDTFAPLSLTGFETLVNNSGTW
NFNVALAPAGITSTTVLGGTLILGADNSAYTGSMTVAQGGVLQSRAQFAPAAITDNGLVR
FAQPDNATYAGLVSGAGGIEKTGAGTLTLTRDQAFTGTTTISAGVLQLGNGGTTGSVKGS
IVNNATLAIDRSDAHTVSNTISGSGSLVKQGAGTTTLTAANSYAGGTALKQGRLNVGHNL
SLGTGALSMDDGTTLGFAANGLNLANAVVLTGSNDPVIDTGSFGATLSGNITGGGFITKI
GNGTLTLSGANSYTGATDVAAGTLKAGATGTFSAASAHTVRSGATLDLAGFSQTVASLAN
SGTVSLVGTAPGTTLTVNGAYVGSGGVLRLGTFLGDSSSVSDRLVLNGGTASGRTSVQIT
QLGGLGALTTGNGIEVVSARNGATTTAQTTKDAFALSGGHVDAGAFEYRLYAADASGAGE
NWYLRSTTTATPSTPSTPSEAGSSGTGAVQVPAYRAEVPIFSTLPSQLRQTDLAMIGNLH
QRIGDDDVKAGAAASTGTERRAWGRVIATDIDIRQQGTVAPHSNGNARGFQAGTDLFATS
NWRAGVYVGQLDGSVKVSGFSGGIANLGVGSNDLRSHYLGAYGTWTADAGFYADAVLQAG
RHRYTAAPLFAQRSAGKGDSLMASIEVGQAFAMGEGGWKIEPQLQLIHQHIGLDDIAISG
ARVRQDSDDGWIARVGVRLKGEIATSLGTLQPYGRFNIYKTSGGADVARFIGPAGTTDIT
GRTGSTVGELAGGLTLALNATTSLYGEVGKLWAAGGKTDVKTALQGALGLRMKW
NT seq
3225 nt
NT seq
+upstream
nt +downstream
nt
atgaatacgatatttcgagtcatctggaatagcgcacttgcgctctggaccgttgcttcc
gaattcgggcgcgggcatgcgagatcgacatcggcgacacgcggcgttccgctgcttgcg
gctgccgcgcttgctgcggcttccttttccgcatcggccgcatgcacgaccgacacggcc
gctcagacgatcacctgcaccggaaccgaccagaccgcaacggtgggcgccggcctggcg
acgccggctggcacggcgatatcgatcgcgtcgggcgcaacggtgagcacgggcaaccag
gcgggcatcagcgccggcaacgccgcaagcatcgtggtgcagagcggtgcggtggtccag
aacaacgccacgaacaaaggcacctcgccctatggcttcatcggtgcgaacacgatcgag
gtcaacgacaacagcacgatcaccatcgaggcgggagcggccgtcaccgccagcggtgcg
ggcaccagcacggaggccatcaatccggtcggcagcggaaacaccatcaccaaccacggc
accgtcagttcctcgcacaccgccatctggttccagtcgaacagcggcgccaacacggtg
gtgaacaccggcacgatcatcgcgggcgccggcacgaactcgacccagacgaccgtcatc
ggtgcaagcggcaccatggccatcgacttcaccaacaggggcagcctcgtcggctcgctc
gccttcgccggcgccagcgatgcattgcgctggtacacgggcgcgtcgatcaccggcaac
atcagcggcggcggaggcgccgacctgctcaccctcaacagcgacaacaacgccaccgac
accttcgcgccgctgtcgctcaccggcttcgaaaccctggtcaacaacagcggaacctgg
aacttcaatgtcgcgctggcgccggcgggcatcaccagcacaaccgtgctcggcggaacg
ctgatcctcggggccgacaacagcgcctacacaggcagcatgaccgtcgcgcagggcggc
gtgttgcagagccgtgcgcagttcgcgccggccgcgatcaccgacaacggcctcgtgcgt
ttcgcgcagccggacaacgccacctacgcgggcctggtgagcggcgcgggcggcatcgag
aagacgggcgcgggcacgctcaccctgacgcgcgaccaggctttcaccggcaccaccacc
atcagcgccggtgtgctgcaactgggcaacggcggcaccaccggctcggtgaaaggcagc
atcgtcaacaacgcgacgctggccatcgaccgctcggacgcgcacacggtgtcgaacacg
atcagcggcagcggctcgctcgtcaagcaaggcgccggcacaacgacgctcaccgcggcc
aacagctatgccggcggcaccgcgctcaagcaaggccggctgaacgtcggccacaacctg
tcgctgggcaccggtgcgctgtcgatggacgacggcaccacgctgggcttcgcggccaac
ggcctcaacctcgccaatgccgtggtgctgaccggcagcaacgacccggtcatcgacacc
ggcagcttcggcgccacgctcagcggcaacatcaccggcggcggcttcatcaccaagatc
ggcaacggcacgctcacgctctcgggcgccaacagctataccggcgcaaccgacgtggct
gcaggcaccttgaaggcaggcgccaccgggaccttcagcgcggcctcggcgcacacggtg
cgcagcggcgccacgctcgaccttgcgggcttcagccagacggtcgcctcgctcgccaac
agcggcaccgtctcgctcgtcggcaccgcaccggggaccaccctcaccgtcaacggcgcc
tacgtcggcagcggcggcgtgctgcggctcggcactttcctgggcgacagcagcagcgtg
agcgaccggctggtgctcaacggcggcacggccagcggacgcaccagcgtgcagatcacg
cagctcggcggcttgggcgcattgaccacgggtaacggcatcgaagtggtctcggcgcgg
aacggcgccaccacgaccgcgcagaccaccaaggacgcgtttgcgctgagcggcggccac
gtcgatgcgggtgccttcgaataccgcctctatgcagccgacgcgagcggtgccggcgag
aactggtatctgcgctcgaccaccacggcgacaccttcgacgccatcgacgccatcggag
gcagggagcagcggcacgggcgccgtgcaggtgcccgcctaccgcgccgaagtcccgatc
ttctccacgctgccgagccagctgcgccagaccgacctggccatgatcggcaacctgcac
cagcgcatcggcgacgacgatgtgaaggccggcgccgccgcatcgaccggcaccgagcgc
cgcgcctggggccgcgtgatcgccaccgacatcgacatccgccagcagggcactgtcgcc
ccgcacagcaacggcaacgccaggggcttccaggccggcacagacctgttcgccacatcg
aactggcgcgccggcgtgtacgtcggccagctcgacggcagcgtcaaggtcagcgggttc
tccggcggcatcgccaacctgggcgtcggctccaacgacctgcggagccactacctgggc
gcctacggcacctggaccgccgatgcgggcttctatgccgacgccgtgctgcaggccggg
cggcaccgctacaccgccgcgccgctgttcgcgcagcgcagcgcgggcaagggcgacagc
ctgatggcgtccatcgaagtggggcaggccttcgcgatgggcgagggcggctggaagatc
gagccgcagttgcagctgatccaccagcacatcgggctggacgacatcgcgatctccggt
gcacgcgtgcggcaggacagcgacgacggctggatcgcgcgcgtcggcgtgcgcctgaag
ggcgagatcgccacctcgctcggcacgctgcagccgtacggccgcttcaacatctacaag
accagcggcggcgccgatgtggcccgcttcatcggaccggccggcacgacggacatcacg
ggccgcaccgggtccaccgtcggcgaactggccggcggcctcaccctggcgctgaatgcc
accaccagcctctacggcgaggtcggcaagctgtgggccgcgggcggcaagaccgatgtg
aagactgcgctgcagggggcgctcggattgcgcatgaagtggtga
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