Variovorax paradoxus EPS: Varpa_4990
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Entry
Varpa_4990 CDS
T01392
Name
(GenBank) DNA repair protein RecN
KO
K03631
DNA repair protein RecN (Recombination protein N)
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_4990
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
Varpa_4990
TLS (translesion DNA synthesis) factors
Other SOS response factors
Varpa_4990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
AAA_23
AAA_21
AAA_29
AAA_22
CCDC93_CC
ABC_tran
RsgA_GTPase
DUF2813
AAA_15
Motif
Other DBs
NCBI-ProteinID:
ADU39150
UniProt:
E6V271
LinkDB
All DBs
Position
5433460..5435142
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AA seq
560 aa
AA seq
DB search
MALRRIALRDFVIVRSLELDLSGGFTVLTGETGAGKSILIDALQLALGNRADAGAVREGA
ERLDVSAEFDADPTLDSWLDEGGFEAGDALLLRRTVDLQGRSRGWINGSPATATQLRELG
DRLLDIHGQHAWQSLTRPEAVRGLLDAYAGVRTDALDAAWQGWRQALSALEHARSAQDSL
QRERERLQWQISEVAKLAPGTDEWEELSTNHSRISNAQALIDAAQGASQALEDDDNGALA
ALSRAATLLQNCEHIEPEFRALGEVLASCVAQASDAAHTLHGYLRDAEADPQSLAELDER
MGLWMSLARRYKRTPGDLPALLAGWQAELQALDAQSDLDGLERTEQNAQQAYLKEAKALG
KARKQAAPRLAQAVTQAMQGLGMQGGRFEVELQPLAQPSRAGLEDIAFLVAGHTGSTPRA
IGKVASGGELSRIALAIAVTTSQLGAAQTLIFDEVDAGVGGAVAETVGRLMKQLGRDRQV
LAVTHLPQVAACADHHLVVAKRQTAGAGKDGPRTESGVSRLDDDTRANEIARMLGGEKVS
QTSLAHAREMLGHKTSAATP
NT seq
1683 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgcgacgcatcgcactgcgcgacttcgtgatcgtgcgatcactcgaactcgac
ctgtccggcggcttcacggtgttgaccggtgaaaccggcgcgggcaaatccatattgata
gacgcgctgcaactggcgctgggcaaccgggccgatgccggcgctgttcgcgaaggcgcc
gagcgcctcgacgtgagcgccgaattcgacgccgacccgacactggacagttggctcgac
gaaggcggcttcgaagccggcgacgcgctgctgctgcgccgcaccgtcgacctgcaggga
cgcagccgcggctggatcaacggcagtccggccaccgccacgcaactgcgcgaactgggc
gaccgcttgctcgacatccacggccagcacgcctggcagagcctcacgcgccccgaggcc
gtgcgcggcctgctcgatgcctacgcgggcgtccgtaccgatgcgctcgacgccgcgtgg
caaggctggcgccaggccctctccgccctcgaacacgcgcgctcggcgcaagactcgttg
cagcgcgaacgcgagcggctgcagtggcagatctccgaagtcgccaagctcgcgcccggc
accgatgagtgggaagagctgtcgaccaaccattcgcgcatctccaatgcccaggcgctg
atcgacgcggcgcagggcgcgagccaggcgctcgaagacgacgacaacggcgccctcgcc
gcgctctcgcgcgcggccacgctgctgcagaactgcgagcacatcgagcccgaatttcgc
gcgctgggcgaggtgctggcctcctgcgtggcgcaggcttcggacgccgcccacacgctg
cacggctatctgcgcgacgccgaggccgatccgcaaagcctggccgaactcgacgaacgc
atgggcctctggatgtcgctcgcgcgccgctacaagcgcacgcccggcgacctgcctgca
ctgctggccggctggcaagccgagctgcaggcgctcgatgcgcaaagcgatctcgacggc
ctggaacgcaccgagcagaacgcgcagcaggcctacctgaaagaagccaaggcactcggc
aaagcccgcaaacaggccgcaccgcgcctggcccaggcggtcacgcaagccatgcagggc
ctcggcatgcaaggcgggcgtttcgaggtcgagctgcagccgctggcgcaacccagccgc
gcgggcctcgaagacatcgccttcctcgtggccggccacaccggcagcaccccgcgcgcg
atcggcaaggtggcctcgggcggcgagctctcgcgcatcgcgctggccatcgccgtgacg
accagccagctcggcgccgcacagacactgatcttcgacgaggtcgatgccggcgttggc
ggtgcagttgccgaaaccgtcggccgcctcatgaagcaactcggccgcgaccgccaggtg
ctggccgtgacccacctgccgcaggtggccgcctgcgccgaccatcacctcgtcgtggcc
aagcgccagacggcgggcgccggcaaggacggcccgcgcaccgagagcggcgtgtcgcgg
ctcgacgacgacacccgcgccaacgaaatcgcccgcatgctgggcggtgaaaaggtctcg
cagacctcgctcgctcatgcccgcgagatgcttggccacaagacctcggcagccacgcca
tga
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