Variovorax paradoxus EPS: Varpa_5038
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Entry
Varpa_5038 CDS
T01392
Name
(GenBank) type I secretion system ATPase
KO
K12541
ATP-binding cassette, subfamily C, bacterial LapB
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Varpa_5038
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_5038
02044 Secretion system [BR:
vpe02044
]
Varpa_5038
Transporters [BR:
vpe02000
]
ABC transporters, eukaryotic type
ABCC (CFTR/MRP) subfamily
ABCC-BAC subgroup
Varpa_5038
Secretion system [BR:
vpe02044
]
Type I secretion system
Adhesin protein transporter
Varpa_5038
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_membrane
ABC_tran
AAA_21
SMC_N
AAA_29
RsgA_GTPase
MMR_HSR1
TsaE
AAA_18
Motif
Other DBs
NCBI-ProteinID:
ADU39198
UniProt:
E6V359
LinkDB
All DBs
Position
complement(5481208..5483325)
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AA seq
705 aa
AA seq
DB search
MTLPSQYPSWLEAMLFVARHYGIGASEESVRVQLAWERGMPLDAMLERMARQLGLALRFS
TSSDALRDPWRLPLVVEFDDGSVGVVRTSDGKGQLGVVLSGDEGLETSLALEELQPRVLR
LATLRPRTAVADARVDEYIKPYRSNWFWTIALHDWRRYGDIMLASMFANVLALSAMVFSM
QIYDRVIPAQSESTLWVLFAGVMLALVFEFLLRMSRTHLSDLIGKRVDLKISDRVFGRAL
RIRTDARSKSTGSFIAQVREVEQVRELLTSTTVGAVADLPFFLLFVVVLWLVAGPLAWVA
LIAVPLLLIPGFLAQRPLARMAKEGMRESALRNAMLVEAVEGIDDIKLMRAEPHFQNRWN
HMNEVAAGISMRQRFLSSLLMTWTQEVQGIAYAVVLLAGCFLVMKGEMTTGALVGASILA
SRMIAPLAQLSSVFTRWQQAKVAREGLDQLMQRPVDQPEGARLVHAPALHGDYLLAGVQF
RYGKTDKRPALEVDKLHIKAGEKVALLGRMGAGKSTLLQILSGLQAPQQGQVSLDALELG
LIDPADLRRDMSLLTQDARLFHGTVRENIVMGMPLATDAEVMEAVAVSGALPFVQSRAQG
LDELIHEGGHGLSGGQRQALLLARTLIRQPSILLLDEPTAHFDELTERQVIAALGSWLEP
RTLIVATHRLPVLQWVDRVIVVDGGRIVMDGTKAQVLGKLSNGND
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgacgttgccatcgcagtacccctcgtggctcgaggccatgctcttcgtggcgcgccac
tacggcatcggagcgtccgaagagagtgttcgcgttcaactggcctgggaacgcggcatg
ccgctcgatgcgatgctggagcgcatggcacggcaactgggactggcgcttcgcttcagc
acctccagcgatgcgttgcgcgacccttggcgcctgcccctggtcgttgaattcgacgat
gggagtgtcggcgttgtccggacttccgatggaaagggccaactcggcgtcgtcctgagc
ggcgacgagggcctcgagacaagcctggcgctcgaggagctgcagccgcgcgtcttgcgg
ctggccactttgcgtccacgaacggcggtagccgatgcgcgggtcgatgaatacatcaag
ccctatcggtcgaactggttctggacgatcgccctgcacgattggcgccgctacggcgac
atcatgcttgcatcgatgtttgccaacgtgcttgcgttgtcggccatggtcttttcgatg
cagatctacgaccgggtgattcccgcgcaatccgaatccacgctttgggtgctgttcgcc
ggggtgatgctggcgttggtcttcgagttcttgctgcggatgtctcgcacccacctctcc
gatctgatcgggaagcgggtcgacctcaagatatcggaccgtgttttcggccgcgcgttg
cgcattcgcaccgacgctcgctccaagtccaccggctccttcattgcccaggtccgcgag
gtcgagcaagtgcgcgagttgttgacttcgaccaccgtgggcgcggtagccgaccttccc
tttttcctgctgttcgtcgtcgtcctgtggctggttgcaggaccgctggcctgggtcgcg
ttgatcgccgtgccgctgctgctgataccagggttcctggctcaacggcccctggcccgc
atggccaaggagggcatgcgcgagtcggctttgcgcaatgcaatgctggtggaagcggtg
gagggtatcgacgacatcaagctgatgcgcgccgaaccgcatttccagaatcgatggaat
cacatgaacgaagtcgcagccggcatcagcatgcgccagcgttttctgagcagtttgctg
atgacatggacccaggaggtgcaaggcatcgcctatgcggtggtgttgctggccggttgc
ttccttgtcatgaagggcgagatgaccaccggggcactggttggagcgtccattctcgcg
tcgcggatgatcgcgcctctggcgcaactgtcgtctgttttcacgcgctggcaacaggcg
aaggtcgcccgcgaagggctcgatcagctgatgcagcggccggtcgatcagcccgagggg
gcccggctggtgcatgcaccggcactccatggcgactatctccttgcgggggtccagttt
cgttacggcaagaccgacaagcgccccgcgctcgaagtggacaagctgcatatcaaggcc
ggggagaaggttgcgttgctgggccgaatgggcgcaggcaagtcgacgctgctgcaaatc
ctttcggggctgcaggcgccgcagcagggtcaggtttctctggatgccctggaactgggg
ttgatagacccggccgatctgcgccgggacatgagcctgctgacgcaggacgcaaggctg
tttcacggaacggtccgcgaaaacatcgtgatgggcatgccgctcgcgaccgatgccgag
gtgatggaggccgtcgccgtgtccggtgccctgcctttcgtgcagtcccgcgcccaaggg
ctcgacgagctcattcatgagggcggtcacggtctttcaggcggccagcgacaggcattg
ctgttggcccgaaccttgatccggcagccgtcgatcctgttgctcgacgaaccgaccgcg
cacttcgatgaactcaccgagcgccaggtgatcgctgcgctcggcagttggctcgagccg
cggaccctgatcgtggccacgcaccggctgccggtgctgcagtgggtcgaccgtgtcatc
gtcgtggacggcggccgcatcgtgatggacgggaccaaggcgcaggtcctgggaaagctc
tccaacggcaatgactaa
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