Variovorax paradoxus EPS: Varpa_5040
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Entry
Varpa_5040 CDS
T01392
Name
(GenBank) FG-GAP repeat protein
KO
K20276
large repetitive protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_5040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Big_12
Big_6
FG-GAP
BapA_N
FG-GAP_3
HemolysinCabind
Cadherin_5
Motif
Other DBs
NCBI-ProteinID:
ADU39200
UniProt:
E6V361
LinkDB
All DBs
Position
complement(5484810..5492255)
Genome browser
AA seq
2481 aa
AA seq
DB search
MSEIVITTKTTAISVNAQSSEIRLTEASVVQFASASTKIKEMKRVGDDLLVTDVGNKVVV
IRDFFKSFNGLKSDLVLRDSNEEGQQQLVLVKLTEGPADLVATYTPIDSIEPLLIHEGTD
LSVLFWALGGGLALSGLAGSGGGDGGGPYILDLVAPAAPTVAPTNGRTITGTAEPGSTVI
VTVGDEVIGEVVVGPDGNFEIKPKNPPGDGSVITVVAKDPDGNTSPPTTATVDGVPPIAP
TVDPTNGGTITGIGESGGRVVARVGDKVIGVAVVDPEGKFTIKPTIPLGDGTVITVVAED
TAGNISPPTTATVDAMAPSVTITNDISAAGDVTFTFTFSEVVDGFGIDDVVLSAGTKGAF
NQKSPTEFTLVVKPPVGQGGVITVDVPAGAAKDKAGNDSLAAKQASQLFDKTAPGAPSVA
ITDDTAGTATGDVTFTFTFSEPVTGFEAGDVAISAGTKGTFTRVSESVYTLVVTPPATGG
GVITVDVPAGAAKDLGGNDNLAAKQASQAYDKTGAGAPSVAITDDTAGAATGDVTFTFTF
SEPVTGFEAGDVAISAGTKGAFTRVSESVYTLVVTPPATGGGVITVDVPAGAAKDLGGND
NLAAKQASQAYDKTGAGAPSVAITDDIVGAATGDVTFTFTFSEPVTGFEAGDVAISAGTK
STFARVSDSVYTLVVTPPATGGGVITVDVPAGAAKDLGGNDSLAAKQASQPYDKTAPGAP
SVAITDDTAGTATGDVTFTFTFSEPVTGFEAGDVAISAGTKGAFTRVSDSVYTLVVTPPA
TGGGVITVDVPAGAAKDLGGNDSLAAAQASQPYDKTAAGAPSVAITDDTAGAATGDVTFT
FTFSEPVTGFEAGDVAISAGTKGTFARVSDSVYTLVVSPPATGGGVITVDVPAGAAKDLG
GNDSLAAAQASQPYDKTAAGAPSVVITDDTAGTATGDVTFTFTFSEPVTGFEAGDVAISA
GTKGAFTRVSESVYTLVVTPPATGGGVITVDVPAGAAKDLGGNDSLAAKQASQAYDKTAP
GAPSVVITDDTAGTATGDVTFTFTFSEPVTGFEAGDVAISAGTKGTFTRVSDSVYTLVVT
PPATGGGVITVDVPAGAAKDLGGNDSLAAAQASQAYDKTAPGAPSVVITDDTAGPATGDV
TFTFTFSEPVTGFEAGDVAISAGTKGAFTRVSESVYTLVVTPPATGGGVITVDVPAGAAK
DLGGNDNLAAKQASQAYDKTAPGAPSVAITDDTAGTATGDVTFTFTFSEPVDGFEVGDVL
LNTGTKGAFNKKSDTEYTLVVTPPAGGSGLITVDVPAGAAKDKAGNDSLSAQQASQPYDK
TGAGAPSVAITDDTAGTATGDVTFTFTFSEPITGFDASDVVISAGTKGAFTRVSDSVYTL
VVTPPATGGGVITVDVPAGAAKDLGGNDSLAAAQASQPYDKTAAGAPSVAITDDTAGTAA
GDITFTFTFSEPVDGFEVGDVLLNTGTKGAFDKKSDTEYTLVVTPLAGGSGVITVDVPAG
AAKDKAGNDSLTAKQARQPYDTTAAGAPSVAITDDTVGTATGDVTFTFTFSEPVSGFNAA
DVVISAGTKGAFSRVSENVYTLVVTPPTIGSGVITVDVPANAAMDLGGNGSLAAPQASQE
FDGAPSVITSVAITSATSIQNQTANAGDVIKVTVILSEATTVTGSPQLALNIGGTTVQAK
YASGSGTTQLVFEYTVMPGQSDGNGISILANSLTPNGGLLLDAAGNNALLSHAAVADNPD
YRVDTSIETPTITTFIDNVGTKMGAFGAGIVTDDNTPQLNGRAEAFSTVRVYGAHLDGGY
ALLGSTTANESGEWLFTPRYQVNGTRSYRVEAEDAAGNISAPSNDFSIQILGPTEKPIEV
GPTYVWSSARAGDVNGDGFDDVLTGVYVSDARDILLGGRVLGASTIDLTPGNPSVYHQSG
IGDINGDGVNDVVTQYANRNGDGFGTAYVYLGDKKSTAWVNSQEFRTRGVGAAGDLDGNG
LSDFVRLGDGKDMQTSSVQYGTAGAITSANIQKDLNFGMSSGGGAYNGAQHSDAVGDFNG
DGLNDLVTSHGIFFGSREGGISSTANRSWITGPNADKANQVQAVSAAGDVNGDGFADVIV
QDGYQAFVVFGGTQEGPITLTAAGLGSNGFVIDTSRRGTQVTAYSVVAGIGDVNGDGLAD
VAISTYGNNYSKTDASVSKIGAATFSSNDSYIIFGKTGTDAVDPLRLGDKTGIVVPEEQA
DGASLVGMFDYNGDGLADFFAGSYNASAKEGHNSKIFTGGASLGALPSDSGSAVGTSRSN
FLTGSAGDDTIVGNGGADIIYSGSGNDTVVLNADNLSYLSKGVQSNDRLARVDGGNGIDT
LKLSDVTSLDLTGISNAGIGFINVSVGMSRIANFERIDLGDGTKDTNLKLSLLDVMDMNA
AVNVFNNSTFGNGLGHKVSRHQLVIDGGSGDTVTVANSSQWISTPAGTVSSGEQVYKIYN
SVGANQGQLLVDSDVAVTFVV
NT seq
7446 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaattgttattacaactaaaacgaccgcgatcagcgtgaacgcgcagtcgagc
gaaattcggctgacggaagcgtcggtagtgcaattcgcgagcgcaagtacaaaaattaag
gaaatgaagcgagtcggcgatgaccttctggtcaccgatgttggaaataaggtcgttgta
attcgcgattttttcaagagtttcaatggtctcaagagcgatctggtgcttcgcgattcc
aacgaagaaggccaacagcaactggttttggttaagttgaccgagggaccggcggatctg
gtcgctacctacacgccaatcgactcaatcgagccgctgctgatccatgaaggcactgat
ctcagtgttctgttttgggcgctcggtggcgggcttgctctttccgggctggcgggcagc
ggtggcggcgatggtggtgggccttacattctggatttggtggcgccagccgcgccgacc
gtggcgccgacgaatggcagaacgattaccgggacggctgagcctgggagtacggtgatc
gtcacggttggagacgaggttattggcgaggtggtggtgggtcccgacggaaatttcgag
atcaagccgaaaaatccgccgggcgatggaagtgtgatcacggtggtggcgaaggatcct
gacggaaataccagtcctcccaccacagcgaccgtagatggcgtgccgccaatcgcacca
actgtggatccgacgaatggcggaaccatcaccgggataggcgagtctggggggcgcgtg
gtcgccagggttggcgataaggttatcggcgtcgcggtggtcgatcccgaagggaagttc
acgatcaaaccgacaatcccgttgggtgacggaactgtgatcacggtggtggccgaggat
actgccggaaatatcagtcctcccaccacggcgaccgtagatgcgatggctccgagcgtg
accatcaccaacgacatctccgccgcgggcgacgtcaccttcaccttcaccttcagcgag
gtggtcgatggcttcggtatcgacgacgtggtcctgagcgccggcaccaagggcgctttc
aaccaaaagagccccaccgaattcacgcttgtggtcaagccaccagtcggccagggcggt
gtcatcaccgtcgacgtgccagccggtgcggccaaggacaaggccggcaacgacagcctg
gcggccaagcaggccagccagctcttcgacaagacggcgcctggcgcaccgagcgtggcc
atcaccgacgacaccgccggtacagccacgggtgatgtcaccttcaccttcactttcagc
gagccggtcaccggcttcgaggctggtgatgtagccatcagcgccggcaccaagggcacc
ttcacccgcgtgagcgaatccgtctacacgctggtggtcacgcctcctgccactggcggt
ggtgtcatcaccgtcgacgtgccagccggtgcggccaaggatctgggcggcaacgacaac
ctggctgccaagcaagccagccaggcctacgacaagacgggagcgggcgcgccgagcgtg
gctatcaccgacgacactgccggcgctgccactggcgacgtcacgttcaccttcaccttc
agcgagccggtcaccggcttcgaggctggtgacgtggccatcagcgccggcaccaagggc
gccttcacccgcgtgagcgaatccgtctacacgctggtggtcacgcctcctgccactggc
ggtggtgtcatcaccgtcgacgtgccagccggcgcggccaaggatctgggcggcaacgac
aacctggctgccaagcaagccagccaggcctacgacaagacgggagcgggcgcgccgagc
gtggctatcaccgacgacatcgtcggggccgccacgggtgacgtcaccttcaccttcacc
ttcagcgagccggtcaccggcttcgaggctggtgatgtggccatcagtgccggcaccaag
agcaccttcgcccgcgtgagcgacagcgtctacacgttggtggtcacgcctccggccacc
ggcggcggtgtcatcaccgtcgacgtgccagcaggtgccgccaaggacctgggcggcaac
gacagtttggcggccaagcaagccagccagccctacgacaagacggcgccgggcgcaccg
agcgtggccatcaccgacgacactgccggcaccgccacgggtgatgtcaccttcaccttc
actttcagcgagccggtcaccggctttgaggctggtgatgtggccatcagtgccggcacc
aagggcgccttcacccgcgtgagcgacagcgtctacacgctggtggtcacgccgccggcc
actggcggtggtgtcatcaccgtcgacgtgccggcaggtgccgccaaggacctgggcggc
aacgacagccttgctgcggctcaggccagccagccctacgacaagacggcagcgggcgcg
ccgagcgtggccatcaccgacgacactgccggcgctgccactggcgacgtcacgttcacc
ttcaccttcagcgagccggtcactggcttcgaggctggtgatgtggccatcagtgccggc
accaagggcaccttcgcccgcgtgagcgacagcgtctacacgttggtggtctcacctcct
gccaccggcggtggtgtcatcaccgtcgacgtgccagcaggtgccgccaaggacctgggt
ggcaacgacagccttgctgcggctcaggccagccagccctacgacaagacggcagcgggc
gcgccgagcgtggtcatcacagacgacactgccggcaccgccacgggtgatgtcaccttc
accttcactttcagcgagccggtcaccggctttgaggctggtgatgtggccatcagtgcc
ggcaccaagggcgccttcacccgcgtgagcgaatccgtctacacgctggtggtcacgcct
ccggccaccggcggcggtgtcatcaccgtcgacgtgccagccggtgcggccaaggacctg
ggtggcaacgacagcctggcggccaagcaagccagccaggcctacgacaagacggcgccg
ggcgcaccgagcgtggtcatcaccgacgacaccgccggcaccgccacgggcgacgtcacg
ttcaccttcaccttcagcgagccggtcaccggcttcgaggctggtgatgtagccatcagc
gccggcaccaagggcacattcacccgcgtgagcgacagcgtctacacgctggtggtcacg
ccgccggccactggcggcggtgtcattaccgtcgacgtgccagcaggtgccgccaaggac
ctgggcggcaatgacagccttgctgcggctcaggccagccaggcctacgacaagacggcg
ccgggcgcaccgagcgtggtcatcaccgacgacaccgccggccctgccacgggagacgtc
accttcaccttcaccttcagcgagccggtcaccggcttcgaggctggtgatgtggccatc
agcgccggcaccaagggcgccttcacccgcgtgagcgaatccgtctacacgctggtggtc
acgcctccggccaccggcggcggtgtcatcaccgtcgacgtgccagccggcgcggccaag
gatctgggcggcaacgacaacctggctgccaagcaagccagccaggcctacgacaagacg
gcgccaggcgcgccgagcgtggccatcaccgacgacaccgccggcaccgccacgggagac
gtcacctttaccttcaccttcagtgagccggtcgatggcttcgaggtcggtgacgtgctc
ctgaacaccggcaccaagggcgctttcaacaaaaagagcgataccgaatacacgctcgta
gtcacgccgccggccggcggcagcggtctcatcaccgtcgacgtgccagccggtgcggcc
aaggacaaggccggcaacgacagcctgtcggcccagcaggccagccagccctacgacaag
acgggagcgggcgcaccgagcgtggccatcaccgacgacaccgccggtacagccacgggc
gacgtcacgttcaccttcaccttcagcgagccgatcaccggcttcgacgcaagcgacgtt
gtcatcagcgccggcaccaagggcgccttcacccgcgtgagcgacagcgtctacacgctg
gtggtcacgcctcctgccaccggcggcggtgtcatcaccgtcgacgtgccagcaggtgcc
gccaaggacctgggcggcaacgacagccttgctgcggctcaggccagccagccctacgac
aagacggcagcgggcgcgccaagcgtggccatcaccgacgacaccgccggcaccgccgca
ggggacatcactttcacgttcaccttcagtgagccggtcgatggcttcgaggtcggtgat
gtgctcctgaacaccggcaccaagggcgctttcgacaaaaagagcgataccgaatacacg
ctcgtggtcacgccgctggccggcggcagcggtgtcattaccgtcgacgtgccagccggt
gcggccaaggacaaggccggcaacgacagcctgacggccaagcaggcccgccagccctac
gacacgacggcagcgggtgcgccgagcgtggccatcaccgacgacaccgtcggcaccgcc
acgggcgacgtcaccttcaccttcaccttcagcgagccggtcagcggcttcaatgccgcc
gacgtggtcatcagcgcaggcaccaagggcgccttcagccgtgtgagcgaaaacgtctac
acgctggtggtcacgccgccgaccatcggcagcggtgtcatcactgtcgacgtgcccgcg
aacgcggccatggacctgggcggcaacggcagcctggcggctccacaggccagccaggag
tttgatggtgcgcccagcgtcatcacgagcgttgccatcactagcgcaacctccatccaa
aaccagactgcgaatgctggcgatgtgatcaaggtcacggtcatcctgagcgaagcgacc
accgtcactggatcgccccaactggccttgaacatcggtggcaccacagtccaggccaaa
tacgcatcgggcagcgggaccactcagctggtcttcgagtacacggtgatgccaggtcaa
agcgatggcaacggcatcagtattcttgccaacagcctgaccccgaacggagggctgctg
ctggacgcggctggaaacaatgccctgttgtctcatgccgcagtggctgacaaccccgat
taccgggtagacacatcgatcgagacgcccacgatcactaccttcatcgacaacgttgga
acgaagatgggtgcgttcggagcaggaatcgtcaccgacgacaacacgcctcaactgaac
ggccgtgctgaagcgttcagcaccgtccgcgtctatggcgcgcacctggacggcggctac
gcgctgctggggtccaccaccgccaacgaatcgggcgagtggctgttcaccccacggtat
caagtcaacgggactcggtcataccgcgtcgaagcggaagatgcggccggaaacatcagc
gccccaagcaacgacttttctattcaaatcctgggaccgaccgagaagcccatagaggtt
ggaccaacgtatgtctggagttcggcacgcgccggtgacgtcaacggcgatggtttcgac
gatgtcttgacgggcgtatacgtcagcgatgcccgggacattctgcttggcggaagagtg
ctcggcgcctctactatcgacctcacgcccggcaatccttcggtgtatcaccaatcgggg
atcggcgacatcaatggcgatggcgtcaacgacgttgttacccagtacgccaacaggaac
ggagatggatttgggactgcctacgtttatcttggcgacaagaaaagtacggcctgggtt
aattctcaagaattccgcacccgaggcgttggtgccgcgggtgatttggatggcaatggg
ctgtccgacttcgttcgcctcggcgacggcaaggatatgcagacttcgtctgtccaatac
ggcaccgcgggtgccatcacttcggccaacatccagaaggatctgaacttcggcatgtcc
tccggaggcggcgcctacaacggggcacagcacagcgacgcagtgggcgacttcaatggc
gatggtctgaacgacctggtaacgagccacggcatcttctttggcagcagggagggaggc
atctcgagcacggcaaatcgttcctggatcacaggcccgaacgccgataaggccaatcaa
gtgcaggcggtcagcgcggcgggcgatgtgaacggcgacggattcgcggatgtcatcgtt
caggacggctatcaggctttcgtcgtattcggcggcacccaagaaggcccaatcacactc
acggcagccggcctgggtagcaatggtttcgtgatcgataccagccgtagaggaacccaa
gtcaccgcgtacagcgtggtggcgggcattggcgacgtcaatggcgatgggttggccgac
gtcgctatcagtacctacggaaataactactcaaagaccgacgcctcggttagcaaaatt
ggtgcagcgacatttagtagcaacgactcgtacatcattttcggcaagacaggtaccgac
gcagtcgatccgctgagactgggtgacaaaaccggcattgttgttcctgaagagcaggcc
gatggggcttcgctcgtgggcatgttcgactacaacggcgatggactcgctgatttcttt
gcgggttcgtacaacgcctccgccaaagaaggccacaacagcaagatcttcaccggtggc
gcttcgctgggcgcactgccctcggacagcgggagcgcggtgggtacgtcgagaagcaat
ttcctgaccggcagcgcgggagacgacaccatcgtcggcaatggaggcgctgacatcatc
tacagcggatcggggaacgacaccgtggtgctgaatgccgacaacctctcttatctgtcg
aagggcgttcaaagcaatgaccgactggcccgggtggacggaggcaatggcatcgacaca
ctgaagttgtcggacgtgacgtctctcgacttgaccggcatcagcaacgcaggcatcggc
ttcatcaacgtgtcggtcggcatgtcgcgcattgccaacttcgagcgcatcgacttggga
gacggtaccaaagacacgaacctgaagctttccttgctcgacgtcatggacatgaatgcg
gcagtcaatgtcttcaacaactcgaccttcggcaacgggctgggccataaagtgtcgcgc
caccaactggtgatcgacggtgggtccggcgatacggtgaccgtggcgaattccagccaa
tggatatccaccccggccggaaccgtgagcagcggcgagcaggtctacaagatctacaac
agcgtcggtgcaaaccagggacagttgctggtcgacagcgacgttgccgtgacgttcgtt
gtctga
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