Variovorax paradoxus EPS: Varpa_5041
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Entry
Varpa_5041 CDS
T01392
Name
(GenBank) RNA polymerase, sigma 32 subunit, RpoH
KO
K03089
RNA polymerase sigma-32 factor
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_5041
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Varpa_5041
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
HTH_3
Motif
Other DBs
NCBI-ProteinID:
ADU39201
UniProt:
E6V362
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All DBs
Position
5493401..5494342
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AA seq
313 aa
AA seq
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MTTLSGVSANQLAVANPWSMVPPLGNLDAYISAANRLPLLTLEEEQGFARKLRDQNDLDA
AGALILSHLRLVVSISRQYLGYGLPHGDLIQEGNVGLMKAVKRFDPDQGVRLVSYAMHWI
KAEIHEYILKNWRMVKVATTKAQRKLFFNLRSMKQGFKADSAASDNGTHRETLSPDEVSQ
MATRLNVKPEEVLEMETRLSGGDVLLDPGPSDDGDEAFGPIAYLADATQEPTALLESQQR
DRLSSDGIATALEALDARSRRIVEERWLKVNDDGSGGMTLHDLAAVYGVSAERIRQIEVA
AMKKMKKALADYA
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atgacaacgctgtctggagtctctgccaaccagctggccgtcgccaatccatggtcgatg
gtccccccgctgggcaacctggatgcttacatttcggccgccaaccgcctgccgctgctc
acgctcgaagaagagcagggcttcgctcgcaagctgcgcgaccagaacgacctcgacgcc
gccggcgcgctgatcctgtcgcacctgcgcctcgtggtttccatttcccgccaatacctg
ggctacgggctgccgcacggcgacctgatccaggaaggcaatgtcggcctcatgaaggcc
gtgaagcgcttcgaccccgatcaaggtgtgcggctggtgagctacgccatgcactggatc
aaggccgagattcacgagtacatcctgaagaactggcgcatggtcaaggtcgcgacgacc
aaggcccagcgcaagctgttcttcaacctgcgctcgatgaagcagggcttcaaggccgac
tcggccgcgtccgacaacggcacgcaccgcgaaacgctgagccccgatgaggtgtcgcag
atggcgacccggctgaacgtcaagcccgaggaagtgctcgagatggaaacccgcctgtcg
ggcggcgacgtgctgctcgatccgggtccgtcagacgacggcgacgaagccttcggcccg
atcgcctatctggccgatgccacacaggagccgaccgcgctgctcgagtcgcagcagcgc
gaccgcctgtcgagcgacggcattgcgaccgcgctcgaagcgctggacgctcgcagccgc
cgcatcgtggaagagcgctggctcaaggtcaacgacgacggctcgggcggtatgacgctg
cacgacctggctgcggtgtacggcgtgagcgccgagcgcattcgccagatcgaagtcgcg
gcgatgaagaagatgaagaaggcgctggcggactacgcgtaa
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