Variovorax paradoxus EPS: Varpa_5105
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Entry
Varpa_5105 CDS
T01392
Name
(GenBank) protein of unknown function UPF0027
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vpe03016
]
Varpa_5105
Enzymes [BR:
vpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
Varpa_5105
Transfer RNA biogenesis [BR:
vpe03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
Varpa_5105
Prokaryotic type
tRNA splicing ligases
Varpa_5105
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
DUF4514
Motif
Other DBs
NCBI-ProteinID:
ADU39265
UniProt:
E6V471
LinkDB
All DBs
Position
complement(5552092..5553315)
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AA seq
407 aa
AA seq
DB search
MEQNYKLHEVANGVPVKMWTNGVPVEDEAKKQLENAARLPIVFKHIAAMPDVHYGIGATV
GSVIPTFKAIIPAAVGVDIGCGMMACKTTLNARDLPDNLGPLRSAIEKAVPHGSNPKRMG
RDKGSWETPPDETDAAWAKLVEEFDLICEDYPRIKNTNNHKHLGTLGTGNHFIEVCLDEA
GAVWFMLHSGSRGVGNAIGTHFIELAKKDAELHQRNLPDQDLAYFEEGAQYFGDYVRAVG
WAQKFARANREVMMQRVVAAARKVITKPFEAHVEAVNCHHNYVSRETHFGEDVLVTRKGA
VSAKAGELGIIPGSMGAKSYIVRGKGNPESFMSCSHGAGRKMSRTKAKKLFTVADQIAAT
EGVECRKDADVIDEIPMAYKGIDAVMEAQKDLVEVVYTLKQVVCVKG
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggaacagaactacaaactgcatgaagtagccaacggcgtccccgtgaagatgtggacg
aacggcgtgcccgtggaagacgaagcgaaaaagcagctcgagaacgcagcgcgcctgccc
atcgtgttcaagcacatcgccgccatgcccgacgtgcactacggcatcggcgcgaccgtg
ggttcggtgatcccgactttcaaggccatcatccccgccgccgtcggcgtggacatcggc
tgcggaatgatggcctgcaagaccacgctcaacgcacgcgacctgcccgacaacctgggc
ccgctgcgctcggcgatcgagaaggccgtgccgcacggatcgaaccccaagcgcatgggc
cgcgacaagggctcgtgggaaacgccgcccgatgaaaccgacgccgcctgggccaagctg
gtggaagagttcgacctgatctgcgaggactacccgcgcatcaagaacacgaacaaccac
aagcacctgggaacgctgggtaccggcaaccatttcatcgaggtgtgcctcgatgaagcg
ggcgccgtgtggttcatgctgcactcgggttcgcgcggcgtgggtaacgccatcggcacg
cacttcatcgaactcgcgaagaaggacgccgagctgcaccagcgcaacctgcccgaccag
gacctggcgtacttcgaggaaggcgcccagtatttcggcgactacgtgcgtgcggtgggc
tgggcccagaagttcgcgcgtgcgaaccgcgaagtgatgatgcagcgcgtggtcgcggcc
gcgcgcaaggtgatcaccaagcctttcgaggcgcacgtggaagcggtgaactgccaccac
aactacgtgagccgcgagacgcatttcggcgaagacgtgctcgtgacccgcaagggcgcg
gtgagcgcgaaggccggcgaactcgggatcatccccggcagcatgggagccaagagctac
atcgtgcgcggaaagggcaaccccgagagcttcatgagctgcagccacggcgccggtcga
aagatgagccgtaccaaggcgaagaagctcttcaccgtcgccgaccagatcgctgccacg
gaaggggtggaatgccgcaaggacgccgacgtgatcgacgagattccgatggcctacaag
ggcatcgacgcggtgatggaggcgcagaaggatctggtggaggtggtctacacgctcaag
caggtggtttgcgtgaaggggtaa
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