Variovorax paradoxus EPS: Varpa_5107
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Entry
Varpa_5107 CDS
T01392
Name
(GenBank) Sigma 54 interacting domain protein
KO
K14414
transcriptional regulatory protein RtcR
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpe03000
]
Varpa_5107
Transcription factors [BR:
vpe03000
]
Prokaryotic type
Other transcription factors
Others
Varpa_5107
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcR
Sigma54_activat
Sigma54_activ_2
Mg_chelatase
AAA_5
AAA
AAA_16
AAA_22
AAA_2
AAA_7
AAA_25
AAA_14
AAA_33
NACHT
MCM
TraC_F_IV
T2SSE
AAA_30
ATPase_2
BrxC_BrxD
Motif
Other DBs
NCBI-ProteinID:
ADU39267
UniProt:
E6V473
LinkDB
All DBs
Position
5555670..5557277
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AA seq
535 aa
AA seq
DB search
MKKPIVVIGFLGTQLDAGQGAGRWNKWRPTVSLAQHEDMVVARMELLYTLRHKALAEVVK
ADIATVSPETTVNLVPLDLEDPWDFGEVYTRLYDWARAYPFDTEREQYWTHITTGTHVAQ
ICMFLLSESRVVPGVLAQTSPPKKQREGEGGKCTLIDLDLSRYDVIARRFDAEQRDAVAF
LKSGIATRNARFNALIDEIERVAVRSRAPILLVGPTGAGKSFLARRMFELKQARHQMTGP
FVEVNCATLRGDGAASTLFGHKKGSFTGAASDRPGLLRTANQGALFLDEIGELGPDEQAM
LLKAIEEKRFFPVGADKEVESDFQLIAGTNRDLRSDVAEGRFREDLFARINLWTYDLPGL
AQRPEDIEPNVDHLLAIHAAENHRVVRFNAEARAAYLRFAQSGEAIWSGNFRDLSASVTR
LATLADGGRIPVALVEAEIARLRWLWKRGGPAAAVSGDVDLDALLGEERVAALDLFDRLQ
LEAVVRVCKQARSLSDAGRQLFQASREQRSVVNDADRLRKYLAKHGIEWGRLAEA
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
atgaagaaacccatcgtcgtcatcggcttcctcggcacccaactcgatgccggccagggc
gcgggccgctggaacaagtggcgtcccaccgtctcgctcgcgcagcacgaggacatggtc
gtcgcgcgcatggagctgctctacacgctgcgccacaaggcgctggccgaggtggtgaag
gcggacatcgccaccgtatcgcccgagaccaccgtcaacctcgtgccgctcgacctcgaa
gacccatgggacttcggcgaggtctacacgcgcctgtacgactgggcgcgcgcctacccc
ttcgacaccgagcgcgagcagtactggacgcacatcaccaccggcacgcacgtcgcgcag
atctgcatgttcctgctgtcggaatcgcgcgtggtgccgggcgtgctcgcgcagacctcg
ccgccgaagaagcagcgcgagggcgaaggcggcaagtgcacgctgatcgacctcgacctc
tcgcgctacgacgtgatcgcgcggcgcttcgatgcggagcagcgcgacgcggtcgcgttc
ctcaagagcggcatcgccacgcgcaacgcgcgcttcaacgcgctgatcgacgagatcgag
cgcgtggccgtgcgctcgcgcgcgccgatattgctggtggggccgactggcgcgggcaag
tcgttcctggcgcggcgcatgttcgagctgaagcaggcgcgccaccagatgaccgggccg
ttcgtggaggtgaactgcgccacgctgcgcggcgacggcgcggcttccaccttgttcggc
cacaagaagggatcgttcaccggggccgcgagcgatcgccccggcttgctgcgcaccgcg
aaccaaggcgcgctgttcctcgacgagatcggtgaactcggccccgacgagcaggcgatg
ctgctgaaggccatcgaagaaaagcgcttctttccggtgggcgcggacaaggaagtggaa
agcgacttccagctcatcgccggcaccaaccgcgacctgcgcagcgatgtggccgaagga
cggttccgcgaagacctgttcgcgcggatcaacctctggacgtatgacctccccggcctc
gcgcaacggcccgaagacatcgagccgaatgtcgatcacttgctggccattcacgcggcc
gaaaaccatcgcgtggtgcgcttcaacgccgaagcgcgagcggcgtacctgcgctttgcg
cagagcggcgaggcgatctggagcggcaacttccgcgacctgtcggcgagcgtgacgcgg
ctcgcgacgctggcggatggcgggcggattccggtggcgctggtggaggcggagattgca
cggttgcggtggctgtggaagcgcggtgggccggcagcggcggtcagtggcgatgtggat
ctggatgcgttgctgggtgaagagcgcgtggctgcgctcgacttgttcgaccggctgcag
cttgaagcggtggtgcgggtgtgcaagcaggcgcgcagcttgtccgatgcagggcgtcag
ctgttccaggcatcacgcgagcagcgcagcgtggtgaacgatgcggaccgcctccgcaag
tacctggcgaagcacggcatcgaatggggccgcctcgccgaggcctga
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