Variovorax paradoxus EPS: Varpa_5222
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Entry
Varpa_5222 CDS
T01392
Name
(GenBank) Deoxyribodipyrimidine photo-lyase
KO
K01669
deoxyribodipyrimidine photo-lyase [EC:
4.1.99.3
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_5222
Enzymes [BR:
vpe01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.99 Other carbon-carbon lyases
4.1.99.3 deoxyribodipyrimidine photo-lyase
Varpa_5222
DNA repair and recombination proteins [BR:
vpe03400
]
Eukaryotic type
SSBR (single strand breaks repair)
Direct repair
Varpa_5222
Prokaryotic type
Varpa_5222
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Motif
Other DBs
NCBI-ProteinID:
ADU39378
UniProt:
E6V5C4
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All DBs
Position
5675798..5677297
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AA seq
499 aa
AA seq
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MPPILLAVDKTYPKGLMWFRRDLRVDDNAALYRALRACRQVVCVFVFDKAILDPLPSADR
RVEFIRESLLELQAELGALSGGLIVRHSHAVQEIPALASDLGVQAVFANRDDEPDALERD
AKVLGALANAGIAFHTYKDSTVFDRDEVLTKTGQPYTVFTPYKRAWLAKVDSFFLKPYPV
RGHADALVPPPQAYREPMPSLGELGFEKTNLSALEIPTGSLGAGVLFEDFFERIDRYDEA
RNFPAVRGPSYMGVHLRFGTVSIRQVASVAHQLSLQGNAGAATWLSELIWRDFYFQILTH
FPHVHKDGESKSFRPEYDKIQWHHGKHADQLLDAWCEGRTGYPLVDAAMLQINQSGYMHN
RLRMVVASFLCKDLGLDWRRGERYFALHLNDFELASNNGGWQWASSSGCDAQPYFRIFNP
VTQSERFDPEGKFIRRYLPQLARLSNAAIHAPWTASPVELEAAGIKLGETYPLPVVDHAE
AREKTLQRYGVARAKALQK
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
atgccacccattttactggccgtcgacaagacctatcccaaggggctcatgtggttccgc
cgcgaccttcgcgtggacgacaacgcagcgctctaccgcgcccttcgcgcctgccgccag
gtggtctgcgttttcgtgttcgacaaggcgatcctggacccgttgcccagcgccgaccgg
cgggtcgaattcatccgcgaatcgctgctggaactccaggcggaactgggcgcactgagc
ggcgggctgatcgtgcggcactcgcacgcggtgcaggaaatccccgcgctcgcgagcgac
ctgggcgtgcaggccgtgttcgccaaccgcgacgacgagcccgatgcgctggagcgcgac
gccaaggtgctaggcgcgctggccaacgcgggcatcgcctttcacacctacaaggactcg
accgtcttcgaccgcgacgaggtgctgaccaaaaccggccagccctacaccgtgttcacg
ccctacaagcgggcctggctcgcaaaggtggattcgttctttctcaagccctacccggtg
cgcggccacgccgatgcgctggttccgccgccgcaggcctaccgcgagccgatgccctcg
ctgggcgaattgggcttcgagaagaccaacctctcggcgctggagatcccgaccggctcg
ctcggcgccggcgtgctgttcgaggatttcttcgagcgcatcgaccgctacgacgaagcg
cgcaatttccccgccgtgcgcggccccagctacatgggcgtgcacctgcgcttcggcacg
gtgtcgatccgccaggtggcgagcgtggcgcaccagctctcgctgcagggcaacgcgggc
gcggcgacgtggctgagtgaactgatctggcgcgacttctactttcagatcctcacgcac
ttcccgcacgtccacaaggacggcgaatccaagagcttccgccccgagtacgacaagatc
cagtggcaccacggcaagcatgccgaccagctcctcgacgcctggtgcgagggccgcacc
ggctatccgctggtcgatgcggccatgctgcagatcaaccagagcggctacatgcacaac
cgcctgcgcatggtggtggcgagcttcctctgcaaggacctggggctggactggcgccgg
ggcgagcgctacttcgcgctgcacctgaacgacttcgagctggcctccaacaacggcggc
tggcaatgggcgagctccagcggctgcgatgcgcagccctacttccgcatcttcaacccg
gtgacgcagagcgagcgcttcgaccccgagggcaagttcatccgccgctacctgccgcag
ctcgcgcggctgtcgaacgcggcgatccatgcgccgtggacggcatcgccggtcgaactg
gaggcggcgggcatcaagctgggcgagacctatcccttgcccgtggtggaccatgccgag
gcgcgcgagaagacgctgcagcgctacggcgtggcgcgggccaaggcgctgcagaaatag
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