Variovorax paradoxus EPS: Varpa_5311
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Entry
Varpa_5311 CDS
T01392
Name
(GenBank) ribosomal RNA methyltransferase RrmJ/FtsJ
KO
K06442
23S rRNA (cytidine1920-2'-O)/16S rRNA (cytidine1409-2'-O)-methyltransferase [EC:
2.1.1.226
2.1.1.227
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_5311
Enzymes [BR:
vpe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.226 23S rRNA (cytidine1920-2'-O)-methyltransferase
Varpa_5311
2.1.1.227 16S rRNA (cytidine1409-2'-O)-methyltransferase
Varpa_5311
Ribosome biogenesis [BR:
vpe03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
Varpa_5311
23S rRNA modification factors
Varpa_5311
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FtsJ
S4
Methyltransf_25
Methyltransf_11
Methyltransf_23
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
ADU39467
LinkDB
All DBs
Position
complement(5768303..5769139)
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AA seq
278 aa
AA seq
DB search
MRADQLLVERGLAASRSQAVRLIAGGMRWRDAGTSDAWRSVVKNKDEVPASAELELDDAA
EARYVSRGGLKLEGALNVSGVDPAGKLCLDVGQSTGGFTDCLLQRGATKVVGVDVGHGQL
HAKLREDERVVAIEGVNARALSPADLQVDDDEDAEAEDAAEVGEVVEAPAEPRFDLIVGD
LSFISLTLVLPAVVQFLADDGQLLMLVKPQFELQPGQVGKGGIVRDDAMYPVVEKRLHDA
CAALELKVLRWFDSPIAGGDGNREFFIHAVRASGANGS
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgctgatcaactgttggtggaacgcggcctcgccgcgtcgcgttcgcaggccgtg
cggctcattgccggcggcatgcgctggcgcgatgcgggcacgagcgacgcatggcgctcg
gtcgtgaagaacaaggacgaagtgcctgcatccgccgagctcgaactcgacgatgcggcc
gaggcgcggtacgtctcgcgcggcgggctcaagctggaaggcgcgctgaatgtgagcggt
gtcgatcccgccggcaagctgtgcctcgatgtgggccagtcgaccggcggcttcaccgat
tgcctgctgcaacgcggcgcgacgaaggtcgtgggcgtcgacgtcggccatgggcaactg
catgcgaagttgcgcgaggacgagcgcgtggtcgccatcgaaggcgtcaatgcgcgggcg
ttgtcgccggccgatctgcaggtggacgatgacgaggacgccgaggcggaagatgccgca
gaggttggcgaggtagtcgaggctccggccgagccgcgcttcgacctcatcgtcggcgac
ctgtcgttcatctcgctcactctggtgctgccggccgtggtgcagttcctggccgacgac
ggccagctgctgatgctggtcaagccgcagttcgaactgcagcccggccaggtcggcaag
ggcggcatcgtgcgcgacgacgcgatgtaccccgtcgtcgagaagcgcctgcacgatgca
tgcgcagcgcttgagctgaaggtgctgcgctggttcgacagcccgatcgccggcggcgac
ggcaaccgcgagtttttcattcacgccgtgcgcgcgtccggcgcgaacggttcctaa
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