Variovorax paradoxus EPS: Varpa_5399
Help
Entry
Varpa_5399 CDS
T01392
Name
(GenBank) Tetracycline transcriptional regulator YcdC domain-containing protein
KO
K09017
TetR/AcrR family transcriptional regulator
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpe03000
]
Varpa_5399
Transcription factors [BR:
vpe03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
Varpa_5399
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TetR_C_3
TetR_N
TetR_C_21
TetR_C_24
Asparaginase_C
TetR_C_29
Motif
Other DBs
NCBI-ProteinID:
ADU39554
LinkDB
All DBs
Position
5863998..5864729
Genome browser
AA seq
243 aa
AA seq
DB search
MGLPSPGRPAAIISSMTSDTAALPSSTAQEMPAPEGPLSRARPGRERIMAAIRTAAVAEF
SLHGLKGTSTQAIAARAGLTKPQLHYYIAGKEELYEELLMQVLHAWKVVFSFEDASDPAT
VLGDYIRKKLDHAIDSPEMSRIFTREILDGGRNLDRYWPNARAWTQKKVDIINGWIARGQ
MRPLDARILLMHIWAMTQSYADYAIQTRVMLGLPPDAPIDREPIARELVAFVLGGCGIKT
TTP
NT seq
732 nt
NT seq
+upstream
nt +downstream
nt
atgggattaccatcgcccgggcgccccgccgccatcatctccagcatgacctccgacacc
gccgccctgccctcctccaccgcccaggaaatgcccgcccccgagggcccgctgtcgcgc
gcacgcccggggcgcgagcgcatcatggccgccatccgcaccgcggcggtcgccgagttc
agcctgcatggcctcaagggcacctcgacgcaggcgattgccgcgcgggccggcctcacc
aagccccaactgcactactacatcgccggcaaggaagagctctacgaagagctgctgatg
caggtgctgcacgcctggaaggtggtgttctcgttcgaggatgcgagcgacccggccacc
gtgctgggcgactacatccgcaagaaactcgaccacgccatcgacagccccgagatgtcg
cgcatcttcacccgcgagatcctcgacggcggccgcaacctcgaccgctactggcccaac
gcccgggcttggacgcagaagaaggtggacatcatcaacggctggatcgcgcgcgggcag
atgcgcccgctcgatgcgcgcatcctcctcatgcacatctgggccatgacccagagctat
gccgattacgcgatccagacgcgcgtgatgctcggcctgccgcccgacgcgcccatcgac
cgcgaaccgatcgcgcgcgagctggtggccttcgtgctgggcggctgcggcatcaagacg
acgacgccttga
DBGET
integrated database retrieval system
