Variovorax paradoxus EPS: Varpa_5456
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Entry
Varpa_5456 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
vpe04146
Peroxisome
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_5456
00071 Fatty acid degradation
Varpa_5456
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Varpa_5456
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_5456
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_5456
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_5456
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_5456
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Varpa_5456
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_5456
Exosomal proteins of breast cancer cells
Varpa_5456
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C
Motif
Other DBs
NCBI-ProteinID:
ADU39611
UniProt:
E6V9C7
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All DBs
Position
complement(5933768..5935399)
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AA seq
543 aa
AA seq
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METLPDRPQQPLHEYLRTHARERGERAACIWYGHAMSWSELDRASDAFAARLQAIGVKKG
EPVLLFLNNCPQYLVAHFGIQKIGAIVCPSGPLNKEHELAYQVNDLKARVIVAAAPLLPV
VRKVQPESALAHVFVVHYADLLPTPAALDLPAELAAEQKQKQKQKAERSVPSDCVDFLAV
MKSGAKPEPVAIDMDDVALMTYTSGTTGLPKGAMLSYGNALFKTRAVVDCNGVRPDDVLL
SIAPLYHIAGMLMGVNVPVLSGAASVLLHRFDPRAVLQAIAAHKVSWWYSIAPMNVACMQ
VPDIAGFDLSSLKMNPVTSFGITFTEPLAAQWRSHAANCSSFEAAYGLSETHTCDTYTPH
HAPRWGTQGIAVPGVTIRIIDTDTGADMPTGEVGEIVLTSPGSFKGYWNKPEATAATLRS
GWVHTGDMGKLDADGYLTFIGRFKEMIKVSGYSVFPEEVETILIKHPAVAQAAVIAQPDA
EKGEVVKAFIVRKPNAELDADALIAWSRENMASYKAPRAVSFIDALPTTGAGKVLRRLLK
DKN
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atggagacactgcccgaccgtccgcaacaacccctgcacgagtacctgcgcacccatgcg
cgagagcgcggcgagcgcgccgcctgtatctggtacggccatgcgatgagctggtccgaa
ctcgaccgcgcaagcgatgccttcgccgcgcgattgcaggccatcggcgtgaagaagggc
gagccggtgctgctctttctcaacaactgcccgcagtacctggtcgcgcacttcggcatc
cagaagatcggtgccatcgtctgcccgagcggcccgctcaacaaggagcatgaactcgcc
taccaggtcaacgacctgaaggcgcgcgtgatcgtcgcggccgcgccgctgttgccggtg
gtgcgcaaggtgcagcccgagagtgcgcttgcgcatgtgttcgtggtgcactacgccgac
ctgctgcccacgccggctgcactcgatctgccggcggaactcgccgccgagcagaagcag
aagcagaagcagaaagccgaacgcagcgtgccgtccgattgcgtagacttcctcgcagtg
atgaagtctggtgcgaagccggagcccgtcgccatcgacatggacgacgtcgcgctcatg
acctacacctccggcaccacgggtctccccaagggcgcgatgctgagctacggcaacgcg
ctcttcaagacgcgcgcggtggtcgattgcaacggcgtgcgtccggacgacgtgctgctt
tccatcgcgccgctgtatcacatcgccggcatgctgatgggcgtgaacgtgccggtgttg
agcggtgccgcctcggtgctgctgcaccgcttcgatccgcgcgcggtgctgcaggccatt
gccgcgcacaaggtgagctggtggtacagcatcgcgccgatgaacgtggcgtgcatgcag
gtgcccgacatcgcaggcttcgacctgtcgagcctgaagatgaacccggtgaccagcttc
ggcatcaccttcaccgaaccgctggccgctcaatggcgctcgcatgccgcgaactgcagt
tcgttcgaggccgcctacggcctgagcgaaacccacacctgcgacacctacacgccgcac
catgcgccgcgctggggtacgcagggcattgcggtgccgggcgtgacgattcgcatcatc
gacaccgatacgggcgccgacatgcctaccggcgaggtcggcgagatcgtgctcaccagc
ccgggctccttcaagggctactggaacaagcccgaggccaccgcggcgacgctgcgaagc
ggctgggtgcacaccggcgacatgggcaagctcgatgccgacggctacctcaccttcatc
ggccgcttcaaggaaatgatcaaggtttcgggctacagcgtgttcccggaagaggtcgag
accatcctcatcaagcatccggcggtggcgcaagccgcggtgatcgcgcagcccgatgcc
gagaagggcgaggtggtgaaggcgttcatcgtgcgcaagcccaatgccgagctcgacgcc
gatgcactcatcgcctggtcgcgcgagaacatggcgagctacaaggcaccgcgcgccgtg
agcttcatcgacgcattgcccaccaccggcgccggcaaggtgctgcgccggctgctcaaa
gacaagaactga
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