Variovorax paradoxus EPS: Varpa_5480
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Entry
Varpa_5480 CDS
T01392
Name
(GenBank) Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase
KO
K07056
16S rRNA (cytidine1402-2'-O)-methyltransferase [EC:
2.1.1.198
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_5480
Enzymes [BR:
vpe01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.198 16S rRNA (cytidine1402-2'-O)-methyltransferase
Varpa_5480
Ribosome biogenesis [BR:
vpe03009
]
Prokaryotic type
rRNA modification factors
16S rRNA modification factors
Varpa_5480
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TP_methylase
RsmI_C
TruB_C
NLRX1_C
Motif
Other DBs
NCBI-ProteinID:
ADU39635
UniProt:
E6V9F1
LinkDB
All DBs
Position
5960669..5961625
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AA seq
318 aa
AA seq
DB search
MASLAPASFGAALAAAHDAAGAQHYPQATLYVVATPIGNLADITLRALHVLQLVDVIACE
DTRHTQSLLRAYGIDRPGARLLAVHQHNEAEAAQAVVARLAQGERIAYVSDAGTPGVSDP
GARLVAAVRAAGQRVLPLPGASSVTTLIGAAGLVADGADGNASSAFVFAGFLPSKAGERD
TAVQALSQEPRAVVLLEAPHRIESLARALAVLGERRITVGRELTKQFEEIATVAASALPD
WFAADRDRVRGEFALVLHPVAVSGDGGAEGERVLRLLLAELPVKTAVRLAAEISGAPRNA
LYETALRIRNDGNDEPGD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
ttggcttcactcgcccctgcttctttcggcgccgcccttgcggccgcgcacgacgccgcg
ggtgcgcagcattatccgcaggccacgctctatgtggtcgccacgccgatcggcaacctg
gccgacatcacgctgcgcgcgctgcacgtgctgcagctggtcgacgtgatcgcctgcgag
gacacgcgccacacacaaagcctcttgcgtgcctacggcatcgaccgccccggcgcccgg
ctgctggccgtgcaccagcacaacgaagccgaggccgcgcaggccgtggtcgcgcggctc
gcgcagggcgagcgcatcgcctacgtgagcgacgccggcacgcccggcgtgagcgacccc
ggcgcgcggctcgtcgcggccgtgcgcgcggcgggccagcgcgtgctgccgctgccgggc
gcgagcagcgtcacgacgctgatcggcgccgccggactggtggcggatggcgcggacggc
aacgcgagcagcgccttcgtcttcgcgggcttcctgccgagcaaggccggcgagcgcgac
accgccgtgcaggcgctctcgcaggagccgcgcgccgtggtgctgctggaagcgccgcac
cgcatcgaaagcctcgcgcgcgcgctggccgtgctgggcgagcgccgcatcaccgtgggc
cgcgagctcaccaagcagttcgaggagattgcgacggtggcggccagcgccctgcccgac
tggttcgccgctgatcgcgaccgcgtgcgaggcgagttcgcgctggtgctgcatccggtc
gcggtgagcggcgatggcggcgcggaaggcgagcgcgtgctgcggctgcttcttgctgaa
ctgcctgtgaagaccgcagtgcggctggcagcagagataagcggcgcgccgcgcaatgcg
ctgtatgagacggcgctacgtatccgcaatgacggcaatgacgagccgggcgactaa
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