KEGG   Variovorax paradoxus EPS: Varpa_5533
Entry
Varpa_5533        CDS       T01392                                 
Name
(GenBank) type VI secretion protein, EvpB/VC_A0108 family
  KO
K11900  type VI secretion system protein ImpC
Organism
vpe  Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:vpe00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:vpe02044]
    Varpa_5533
Secretion system [BR:vpe02044]
 Type VI secretion system
  Imp/Vas secretion system core components
   Varpa_5533
SSDB
Motif
Pfam: VipB VipB_2
Other DBs
NCBI-ProteinID: ADU39688
UniProt: E6VAE4
LinkDB
Position
complement(6022781..6024271)
AA seq 496 aa
MTAQALSASSGAASPEASVDLLDQIVEKSKVAKSDAEHTRAKDLIGELVSQVLEGSVIVS
DNVSAMIDARVADLDALISAQLSAVMHAPEFQKLESTWRGLEYLVKETPTGTMLKIKVIN
ATKRDLIRDFKAAVEFDQSAMFKKVYEEEFGTFGGAPFGALVGDFAVTRQPEDMYFLDQM
AHVAAAAHAPFIGAASPELLGLESFDDLGKPRDMAKVFDTVEYAKWKSFRDSEDSRYVGL
TLPRFLGRLPYHPREGTVVDSFNFVEDVDGTDHSKYLWCNAAWAFATRLTAAFDDFGWCA
AIRGVEGGGLVEDLPTHTFKTDEGEIALKCPTEIAITDRREKELSDLGFIPLVHCKNSDY
AAFFGAQSLQKPKKYNTDSANANAVLSAQLQYIFSVSRIAHYLKAMMRDKIGSFASAHNV
EQFLNRWIAQYVLLDDNATQEQKAQFPLREASIQVGEVPGRPGVYRAVAFLRPHFQLDEL
SISLRLVADLPKSVNK
NT seq 1491 nt   +upstreamnt  +downstreamnt
atgactgcgcaagcactttcggcatccagcggtgccgcctcgcctgaagcttcggtcgac
ctgctcgaccagatcgtcgagaagagcaaggtcgccaagtccgacgccgagcacacccgc
gccaaggacctcatcggcgaactggtcagccaggtgctcgaaggctcggtgatcgtctcc
gacaacgtctcggccatgatcgacgcccgcgtggccgatctggacgcgctcatctccgcg
cagctgagcgccgtgatgcacgcgcccgagttccagaagctcgagagcacctggcgcggc
ctcgagtacctcgtgaaggaaacgcccaccggcacgatgctcaagatcaaggtcatcaac
gccaccaagcgcgacctgatccgcgacttcaaggcggccgtcgagttcgaccagagcgcg
atgttcaagaaggtctacgaagaagaattcggcaccttcggcggtgcgcccttcggcgca
ctggtcggcgacttcgccgtcacgcgccagccggaagacatgtacttcctcgaccagatg
gcgcacgtggccgctgccgcccacgcgcccttcatcggcgccgcgtcgcccgagctgctg
ggcctggagagcttcgacgacctgggcaagccgcgcgacatggccaaggtgttcgacacc
gtcgaatacgccaagtggaagtcgttccgcgattcggaagactcgcgctacgtgggcctc
acgctgccgcgcttcctcggccggctgccctatcacccgcgcgaaggcacggtggtcgac
agcttcaatttcgtggaagacgtcgacggcaccgaccattccaagtacctctggtgcaac
gccgcctgggcgttcgccacgcgcctcacggccgcgttcgacgacttcggctggtgcgcc
gcgatccgcggcgtggaaggcggcggcctggtcgaagacctgcccacgcacaccttcaag
accgacgagggcgagatcgccctgaagtgcccgaccgagatcgccatcaccgatcggcgc
gagaaggaactgagcgacctgggcttcattccgctcgtgcactgcaagaactccgactac
gcggccttcttcggtgcgcagtcgctgcagaagcccaagaagtacaacaccgacagcgcc
aacgccaacgcggtgctctcggcgcagctgcagtacatcttctccgtgtcccgcatcgcg
cactacctcaaggccatgatgcgcgacaagatcggcagctttgcctcggcacacaacgtc
gaacagttcctcaatcgctggatcgcgcagtacgtgctgctcgacgacaacgcgacgcag
gaacagaaggcgcaattccccttgcgggaagcgtccatccaggtgggcgaagtgcccggc
cggcctggtgtctaccgtgcggtcgctttcctgcggccccactttcaactggatgagctg
tcgatttcactgcgcttggtcgccgatctgccgaagtcagtgaataagtaa

DBGET integrated database retrieval system