Variovorax paradoxus EPS: Varpa_5540
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Entry
Varpa_5540 CDS
T01392
Name
(GenBank) OmpA/MotB domain protein
KO
K03286
OmpA-OmpF porin, OOP family
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_5540
Transporters [BR:
vpe02000
]
Other transporters
Pores ion channels [TC:
1
]
Varpa_5540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OmpA
BON
Motif
Other DBs
NCBI-ProteinID:
ADU39695
UniProt:
E6VAF1
LinkDB
All DBs
Position
complement(6029830..6030651)
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AA seq
273 aa
AA seq
DB search
MKSYLRVLSFTLGLVMVGAVQAQTAAAPGARVETTPAASAKGEQVVAGGQVPDEATRVAV
IEALRRIYGPSGVVDKIEVVNTVSMPANWSANVQRLITPALKDIHRGQFQIEGTQMALSG
EVGNEALRQKIVSDMANSLNPTYTIKNSLRVPVSEQITVDQALANRTIEFELGSATLTRK
GRDILDEMAPILQKLTNKSVAVIGHTDNAGSRASNLALSQSRAEAVKGYLVGKGIDPMTL
TTSGVGPDQPVANNATDEGRSRNRRIEFRVGRT
NT seq
822 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagttatttgcgcgttttgtcgttcaccctgggtctcgtaatggtcggcgccgtg
caggcccagacggcagccgctcccggcgcccgggtcgaaaccacgccagcggccagcgcc
aagggcgagcaggtcgtggccggcgggcaggtgcccgacgaggccacgcgcgtcgccgtc
atcgaggcgctgcgtcgcatctacgggccgagcggcgttgtcgacaagatcgaggtggtg
aacaccgtgagcatgcccgccaactggtcggccaatgtgcagcggctgatcacgcccgcg
ctcaaggacatccatcgcgggcagttccagatcgagggcacgcagatggcgttgagcggc
gaggtcggcaacgaagcgctgcgccagaagatcgtgagcgacatggccaattcgctcaac
ccgacctacaccatcaagaacagcctgcgcgtgccggtgtcggagcagatcacggtcgac
caggcgctggccaaccgcaccatcgagttcgaactgggcagcgccacgctcacgcgcaag
ggccgagacatcctcgacgaaatggcgccgatcctgcagaagctcacgaacaagtcggtg
gcggtgatcggccacaccgacaacgccggcagccgggcgtcgaacctggcgctgagccag
tcgcgcgccgaggcggtgaagggttatctcgtgggcaaggggatcgatccgatgacgctc
acgacctcgggcgtcggtccggatcagccggtggcgaacaacgcgaccgacgaaggccgc
tcacgcaaccggcgcatcgagttccgggtcgggcggacctga
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