Variovorax paradoxus EPS: Varpa_5556
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Entry
Varpa_5556 CDS
T01392
Name
(GenBank) two component, sigma54 specific, transcriptional regulator, Fis family
Organism
vpe
Variovorax paradoxus EPS
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
Response_reg
Sigma54_activ_2
HTH_8
AAA_5
AAA
AAA_2
Mg_chelatase
AAA_22
HTH_23
HTH_28
HTH_30
AAA_3
AAA_7
AAA_16
HTH_29
AAA_30
MCM
FleQ
Phage_NinH
MIEAP
Motif
Other DBs
NCBI-ProteinID:
ADU39710
UniProt:
E6VAG6
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Position
6051030..6052385
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AA seq
451 aa
AA seq
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MAHLLIVDDDDAFRDTLAETLQGLGHDVIAAAGGAEAMETLARGRFDAVFLDHRMPGMDG
LQTLAAMQARLVHLPPVIVLTAFASAGNTIEAMRLGAFDHLAKPISREAVREVLERALQQ
RTTATPSSAPAEEDDSGGDLIGPGHAMREVHKRIGLAAANSMPVLVLGETGTGKEMVARA
LHRHSARADRPFVAINCSAIPKELLESELFGHVRGAFTGATGERPGCFRAADGGVLLLDE
IGDMALDMQAKILRALQEGEVTPLGSHRTIKVDVRVIAATHRDLAAAVREGRFREDLLYR
LDVLSIRLPPLRERLADIIPLAEHFLRRAATPEAPKALSADAAQRLLSHPWPGNVRELRN
VMERCQALVRHRVIGGADLAAALGTARPGETEQTLPAGWLDAELPAAVERLERLLIANAL
AESGGNRAEAARRLGIHRQLLYRKLTQHGLE
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacctgctgatcgtcgatgacgacgatgcctttcgcgacacgctggccgagacg
ctgcagggcctcggccacgacgtgatcgccgcggccggcggcgccgaggcgatggagacg
ctggcgcgcggacgcttcgacgccgtgttcctcgaccaccgcatgcccggcatggacggc
ctgcagacgctcgccgccatgcaggcgcggctggtgcacctgccgccggtgatcgtgctc
accgcgttcgcgagcgcgggcaacaccatcgaggcgatgcgcctgggcgccttcgaccat
ctggccaagccgatcagccgcgaggcggtgcgcgaagtgctggaacgcgcgctgcagcag
cggacgaccgcaacgccgtcgagcgccccggcggaagaagacgacagtggcggcgacttg
atcggccctggccacgcgatgcgcgaagtgcacaagcgcatcggcctggccgcggcgaat
tcgatgccggtgctggtgctcggcgaaacgggcaccggcaaggaaatggtagcgcgcgcg
ctgcaccgccattcggcacgcgccgaccggcccttcgtggctatcaactgctcggccatt
ccgaaggagctgctcgaaagcgaactcttcggccatgtgcgcggcgcgttcacgggtgcc
acgggcgagcgcccgggatgctttcgcgcggccgacggcggcgtgctgctgctcgacgag
atcggcgacatggcgctggacatgcaggccaagatcctgcgcgcactgcaggagggcgag
gtcacgccgctgggcagccacagaacgatcaaggtcgacgtgcgcgtgatcgccgcgacg
caccgcgacttggccgccgcagtgcgcgaggggcgctttcgggaagacctgctctaccgg
ctcgatgtgctctcgatccgcctgccgccgctgcgcgagcggctggccgacatcattccg
ctggccgagcacttcctgcgtcgcgcggcaacgccagaggcaccgaaggcgctgtccgcc
gacgccgcgcagcggctgctgagccacccctggcccggcaacgtgcgcgagctgcgcaat
gtgatggagcgttgtcaggcgctggtgcgccaccgcgtgatcggcggcgcggacttggct
gcagcactgggcacagcgcgccccggcgagaccgagcagacgctcccggccggctggctc
gacgccgagctgcccgccgccgtggagcggctggagcggctgctgatcgcgaacgcgctc
gcagagtccgggggcaatcgcgccgaggctgcacgccggctgggcattcaccggcagttg
ctctaccgcaagctcacccagcacggccttgagtaa
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