Variovorax paradoxus EPS: Varpa_5647
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Entry
Varpa_5647 CDS
T01392
Name
(GenBank) ABC transporter related protein
KO
K09695
lipooligosaccharide transport system ATP-binding protein
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe02010
ABC transporters
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
Varpa_5647
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
vpe02000
]
Varpa_5647
Transporters [BR:
vpe02000
]
ABC transporters, prokaryotic type
ABC-2 type and other transporters
Lipooligosaccharide transporter
Varpa_5647
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_15
AAA_22
SMC_N
AAA_16
AAA_30
SbcC_Walker_B
AAA_23
Motif
Other DBs
NCBI-ProteinID:
ADU39800
UniProt:
E6VBK0
LinkDB
All DBs
Position
6134077..6135057
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AA seq
326 aa
AA seq
DB search
MAARAAGLRQNGRVPSSSSTPPLFHASHLRKRYGDTTVVDDLSFEIAPGECLGVIGPNGA
GKTTTIRMCLGLTAPDGGEISALGLQMPRDALAIKAQLGVVTQFDTLDPDFSCAENLVVY
GRYFGFSKAEVRARVPQLLEFAALSHKADAKPGELSGGMRRRLSLARALVNDPRLLLLDE
PTTGLDPQARHLMWERLQVLLQQGKSILLTTHFMDEAERLCSRLLVLDHGRKIAEGKPRD
LIAEHLEPDVVEVYGNGALSLAESPELKAMAARVEVSGETVFFYTQDARRLLDALTRHGG
LRTFHRPANLEDLFLKLTGRQIREDS
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgcgcgccgcaggcctgcgccagaatggccgcgtgccatcctcttcttccacc
cctcccctcttccacgccagccacttgcgcaagcgctacggcgacaccacggtcgtggac
gacctgtcgttcgagatcgcgccgggtgaatgcctcggcgtgatcggccccaacggcgcc
ggcaagaccaccaccatccgcatgtgcctgggcctcaccgcgcccgacggcggcgagatc
tcggcgctcggtttgcagatgccgcgagacgcgctcgccatcaaggcgcagctgggcgtg
gtcacgcagttcgacacgctcgaccccgacttcagctgcgccgagaacctcgtggtgtac
ggccgctacttcggattcagcaaggcagaggtgcgcgctcgcgtgccgcagttgctggag
ttcgcggcgctctcgcacaaggccgatgcgaagccgggcgagctctcgggcggcatgcgc
cggcggctgtcgctggcgcgtgcgctggtgaacgaccccaggttgctgctgctcgacgaa
ccgaccaccgggctcgacccgcaggcgcgccacctgatgtgggagcggctgcaggtgctg
ctgcagcagggcaagtcgatcctgttgacgacgcacttcatggatgaggccgagcgcctg
tgttcgcgccttctggtgctcgaccacggccgcaagatcgccgaaggcaagccgcgcgac
ctgatcgccgagcacctggagcccgatgtggtcgaggtgtatggcaacggtgcgctgtcg
ctggccgagtcgcccgaactcaaggcaatggcggcacgcgtcgaagtgagcggggagacg
gtgttcttctacacgcaggacgcgcggcggctgctcgacgcgctcacgcggcacggcggc
ctgcgcaccttccatcgccccgcgaatctcgaagaccttttcctgaagctcaccgggcgg
cagatccgcgaggacagctag
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