Variovorax paradoxus EPS: Varpa_5709
Help
Entry
Varpa_5709 CDS
T01392
Name
(GenBank) AMP-dependent synthetase and ligase
KO
K01897
long-chain-fatty-acid---CoA ligase [EC:
6.2.1.3
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe00061
Fatty acid biosynthesis
vpe00071
Fatty acid degradation
vpe01100
Metabolic pathways
vpe01212
Fatty acid metabolism
vpe02024
Quorum sensing
vpe04146
Peroxisome
Module
vpe_M00086
beta-Oxidation, acyl-CoA synthesis
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09100 Metabolism
09103 Lipid metabolism
00061 Fatty acid biosynthesis
Varpa_5709
00071 Fatty acid degradation
Varpa_5709
09140 Cellular Processes
09141 Transport and catabolism
04146 Peroxisome
Varpa_5709
09145 Cellular community - prokaryotes
02024 Quorum sensing
Varpa_5709
09180 Brite Hierarchies
09181 Protein families: metabolism
01004 Lipid biosynthesis proteins [BR:
vpe01004
]
Varpa_5709
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
vpe04147
]
Varpa_5709
Enzymes [BR:
vpe01000
]
6. Ligases
6.2 Forming carbon-sulfur bonds
6.2.1 Acid-thiol ligases
6.2.1.3 long-chain-fatty-acid---CoA ligase
Varpa_5709
Lipid biosynthesis proteins [BR:
vpe01004
]
Acyl-CoA ligase
Long/very long chain acyl-CoA ligase
Varpa_5709
Exosome [BR:
vpe04147
]
Exosomal proteins
Exosomal proteins of breast milk
Varpa_5709
Exosomal proteins of breast cancer cells
Varpa_5709
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AMP-binding
AMP-binding_C_3
Motif
Other DBs
NCBI-ProteinID:
ADU39862
UniProt:
E6UVJ7
LinkDB
All DBs
Position
6201133..6203088
Genome browser
AA seq
651 aa
AA seq
DB search
MQTNDPTFPRLLLAHAQAQPESPAVREKDLGIWQTWNWNAVAEEVREMACGLASLGFKPF
DNLAIVGANRPHLYMAVVAAQSLRGVPVPLYQDAVASEMVFMLQDAAIDFVIVEDQEQVD
KLLECRELQKDQQHGIRHIIYDDPKGLRHYDQPGLMSYEELRALGREFDKANVGYYDRAV
ASGEATDVGVILYTSGTTGRPKGVCQTHASFIAAGRGGVETDRLGPGDNIMSYLPMAWVG
DHLFSVAQWLVGGFTLNCPESAETVMNDMREIGPSYYFGPPRTFEGLLTAVSIRMEDAAA
PKRWLYAKFMALAQRVGADILNGAPVSTGDRLMYGLGNLLIYGPLRNVLGMSRIRVAYTA
GAAIGPDLFRFYRSIGVNLKQFYGQTETCAYVCLQQDGKVKLQTVGTAAPGIELKIAEDG
EVLVRGVSVLKEYYKRPDATAEVLDANGYFHTGDAGVLDSEGHLRIIDRAKDVGRLVSGA
IFAPNYIENKLKFFPQIKEAVCFGNGRNEVCAAINIDFEAVGNWAERRGLAYGGYVDLAG
KPEVLALIAECIGKVNADLASEDGMGETQIARFLVLHKELDPDDDELTRTRKVRRGFIAE
KYAVLVDALYGGKTAQFIETQVKFEDGRTGVVSATLKINEAKTFPIVKAAA
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
gtgcaaacaaacgaccccaccttcccccggctgctgctcgcgcatgcccaggcccaaccc
gagtcgcccgccgtgcgcgagaaagacctcggcatctggcagacctggaactggaacgcc
gtggcagaggaggtgcgcgagatggcctgcggcctcgcgagcctcggcttcaagcccttc
gacaacctcgccatcgtgggcgccaaccggccgcacctgtacatggcggtggtcgccgcg
cagagcctgcgcggcgtgccggtgccgctctaccaggacgcggtggcgagcgaaatggtc
ttcatgctgcaggacgcagccatcgacttcgtgatcgtcgaagaccaggagcaggtcgac
aagctgctcgagtgccgcgagctgcagaaggaccagcagcacggcatccgccacatcatc
tacgacgaccccaagggcctgcgccactacgaccagcccgggctcatgagctacgaggag
ctgcgcgcgctgggccgcgagttcgacaaggccaacgtcggctactacgaccgcgcggtg
gcaagcggcgaagcgaccgacgtcggcgtgatcctctacacctcgggcaccaccggccgc
cccaagggcgtgtgccagacgcatgcgagcttcatcgcggcgggccgcggcggcgtggag
accgacaggctcggccccggcgacaacatcatgagctacctgccgatggcctgggtgggc
gaccacctcttctcggtggcgcagtggctggtgggcggcttcacgctcaactgccccgag
tccgccgagacggtgatgaacgacatgcgcgagatcggcccgagctactacttcggcccg
ccgcgcaccttcgaagggctgctcactgcagtgtcgatccggatggaagatgcggccgca
ccgaagcgctggctctatgcgaagttcatggcgctcgcgcagcgcgtgggtgcagacatc
ctcaacggtgcgccggtgagcacgggcgaccggctgatgtacggcctcggcaacctcttg
atctacgggccgctgcgcaatgtgctgggcatgagccgtatccgcgtggcgtacacggcc
ggcgcggccatcgggcccgacctgttccgcttctaccgctccatcggcgtgaacctgaag
cagttctacggccagaccgagacctgcgcgtatgtgtgcctgcagcaggacggcaaagtg
aagctgcagaccgtgggcaccgccgcaccgggcatcgaactgaagatcgccgaagacggc
gaagtgctggtgcgcggcgtctcggttctcaaggagtactacaagcgccccgacgccacc
gccgaggtgctcgatgccaacggctacttccacaccggcgatgctggcgtgctcgacagc
gaagggcacctgcgcatcatcgaccgcgccaaggatgtcggccggctcgtgagcggtgcg
atctttgcgcccaactacatcgagaacaagctcaagttcttcccgcagatcaaggaagcc
gtgtgcttcggcaatggccgcaacgaggtctgcgcggccatcaacatcgacttcgaagcg
gtgggcaactgggccgagcgccggggccttgcctatggcggctacgtcgacctggccggc
aagcccgaggtgctcgcgctgattgccgaatgcatcggcaaggtcaacgccgacctcgcg
agcgaagacggcatgggcgagacgcagattgcgcgcttcctcgtgctgcacaaggaactg
gaccccgacgacgacgagctgacccgcacgcgcaaggtgcgccgcggcttcatcgccgag
aaatacgccgtgctggtcgatgcgctctatggcggcaagaccgcgcagttcatcgagacc
caggtcaagttcgaggacggacgcacgggggttgtcagcgccacgctgaagatcaacgaa
gccaagaccttccccatcgtgaaggccgccgcatga
DBGET
integrated database retrieval system
