Variovorax paradoxus EPS: Varpa_5732
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Entry
Varpa_5732 CDS
T01392
Name
(GenBank) YD repeat protein
Organism
vpe
Variovorax paradoxus EPS
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RHS_repeat
RHS
DUF6531
Dicistro_VP4
Motif
Other DBs
NCBI-ProteinID:
ADU39885
UniProt:
E6UWF5
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All DBs
Position
6232995..6238058
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AA seq
1687 aa
AA seq
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MADMSQAEMTKKEDEQEMFVKPLDQIDPAELPGAKKVVNDWLKSISGDHVTVDRVMTVAS
AVPILGNILAAIDAVCDIIVLVQNKTSSSIEKGLNWVSLGINLIGIIPFPPTMAAARTSL
RPALHLVRSKLRTVGHGLDDALVVLLVDHLNATLAGEIDKFVNEAIQKLESILDEAATMA
HDLISGLSNALRKLASGTPFDTSAPAPALPLKRDPETTYESGVWGAIKGIADDVGDGIAD
GAGYVGGKVVQGAKVAGNAGVGLVMRNTEVGGKASKLMNTYADALDGLAKTAKAQIKALG
NAGAGMSIAWLLVRLKDAVLRFRTKGKGKAGGSTVNDKTTAKHDQKKPEGELDTGHSERT
KKVREANACKNCETGAATPRSISFATGSETFVHTDFTLPGHMPIVWSRTYYSRLAAYDHA
QHHAAHADSSAYLGARWTSPYTTRIDQAVDGSLSYFAADGREHRFPKLAEPEDGKAGQTH
HNAIEDLTLGRGNAGLLILSHGRDYIETFELAPQFMREGKARTKNKAVHYRLASQRTRAG
HTTELAYRHEGGQLSDVVSGQLHVSTAIDALGRIQSLWLVQDGQAVRQLAAYTHRTLADG
SSDLIAAQDENQQSWHYEYQAAGEKASTHLISGYTDRTGRGTHLHWKHEDGFDIGLTADN
SAEAKAYREHADDGSFDTTIVWNKHIRLATVIDALGAQTRYYFDFLGYTYRIIHPEVRSA
DGLLYAHEEWFFRDANKNITKHLHPDGSQDRYTYDAHNNLVSHTRADHSTVHIAHDDMDN
LTGIRDAEGHAWKRTYEGVNLIEEIDPLGHKTEYAYNEHGLPVEITDAKGGKKQLAYDDA
GQLVAYTDCSGKTSSWAYDERGRLIKQRNAAGEITRYRYERGQLTRIVNPDGTEEQLAHD
AEGRLLSHRDALQRETRYEYNAVGLITQRLDANRNTIDYQWDRLGRLAALRNENGRTHSF
SYDPLGKLLSEVQFDGSRTVYGYTPATGVLRQVTEGDAVTQLDFDPTGRLTKRTAGLYIE
PTDSQGRPTGRTLDAKSIQTDSYAYDGNGQLIDAHNPHIHLQWFPDAAGNVKTEHHHYLI
DEEGRPSSQPMTAVWQHRYDELGNRIQTTRPDGHTTTWLTYGSGHVHGLMLDGMEAVQIE
RDDLHREVKRIQANEVAQEQQYDPAGRLKAQVLSRVERLSQSRGGSSTSNASALGIQRKY
SYDRAGQLTDIGDSRRGSLSYRYDPAGRLLQAQSQLGTETFAFDPASNILDPMAPAAREA
GTIHNIPPILNNLVKDYAGTHFEYDVRGNMVQRLHNGQRTRFAWDALGRLTEARTQDTRT
SFLYDPLGRRIAKRSEPIVITSSMDGSHYHAAEYRRQIHERGLGAVLFGWDGDQMAWECD
YARQRTVHYVFEPGSFVPLLQAKSNVDMRRAMLQRPQAVTQSYVDAQGNYDLDQDPLYNG
MYEAGIGSDGEPPEPLTDIHYYQCDHLGTPMELTDEGGNVAWEANYKAWGEARLTISEAA
RKAGLKNPIRFQGQYLDEETGLHYNRFRYYDPVMGRFVSKDPIGLQGGINLHHYAPNSTE
WIDPFGLIRGRPNIGDAGRKQKTGKPNIDNRCLSCKKWEINRFDRICEGQIPGVGVAKYL
RDPKDKRWYSVDQTAHGGSAFKQYNQKGNLLNHIRDLDEFGDQMGKHKGNAGKIVDLKSL
KCKDVNS
NT seq
5064 nt
NT seq
+upstream
nt +downstream
nt
atggccgacatgtcgcaggcggagatgacgaagaaagaggacgaacaggagatgttcgtc
aaaccgctggaccagatcgaccctgcagagcttccgggcgccaagaaggttgtcaacgac
tggctcaagagcatcagcggcgaccacgtcacggtggacagagtcatgacagtcgccagt
gccgttccaatactcggcaacatcctggcggccatcgatgccgtgtgcgacatcatcgtt
cttgtccagaacaaaacctccagcagcatcgagaaggggctcaactgggtcagccttggc
atcaacctgatcggcatcattccgttccccccgaccatggctgcggcgcggaccagcctg
aggcctgcactgcatcttgtgcgaagcaagttgcgcacagtcggccacggactcgacgat
gccctcgtcgtgctgcttgttgaccatctcaatgccaccctggctggtgagatcgacaag
ttcgtgaacgaggccatccagaagctcgagagcattctggacgaagccgccaccatggcg
cacgacctgatctccggattgagcaatgccttgcgcaagctcgcatcgggcacgccgttc
gataccagtgcaccagcgccagcactccccttgaagcgcgacccagagacaacctacgag
agcggcgtctggggagccatcaaggggattgcagacgatgtcggggacggaatcgcagac
ggcgccggttatgtcggcgggaaagtcgtgcaaggcgccaaggttgcgggcaatgccgga
gtcggcctggtcatgcgcaacaccgaggtcggcggcaaggcttcaaagctgatgaacacc
tacgccgacgcgttggacggtttggccaaaacggcgaaggcgcagatcaaggcgttgggc
aatgcgggagccggcatgtccattgcctggcttctcgtgaggctcaaggacgccgtcttg
cgctttcgcaccaagggcaagggcaaagcgggaggctccactgtcaatgacaagaccacc
gcaaagcacgatcagaaaaagccggaaggggagctggacacggggcactcagaacgcaca
aagaaagtgcgtgaagccaatgcttgcaagaattgcgaaacgggtgccgcaacgccccgc
tccatcagctttgcaaccggcagcgagactttcgttcataccgacttcaccttgccgggc
cacatgcccatcgtctggagtcgcacctactactcgcgcctggcagcctacgaccacgcg
cagcatcacgctgcacatgccgacagcagcgcctatcttggtgctcggtggaccagtccc
tacaccacccgcatcgatcaggccgtagatggcagcctgagctacttcgcggccgatggc
cgcgagcatcgcttccccaagctggccgaacctgaagatggcaaggccggccagactcac
cacaatgccattgaagatctcaccctggggcgaggcaatgcaggcctgctcatcctgagc
catgggcgcgactacatcgagaccttcgagctcgctccccagttcatgcgcgagggcaag
gcgcgcaccaagaacaaggccgtgcattaccgcctggcaagccagcgcacccgcgccggt
cacacgaccgagttggcctatcgccacgaaggcgggcagctctccgatgtggtcagcggc
cagctccatgtgagcacggccatcgacgcgcttgggcgcatccaaagcctgtggctcgtg
caggacggacaggccgtgcgccaactcgccgcctacacccatcggacgctggccgacggc
agcagtgacctcatcgccgcccaggatgagaaccagcaaagctggcactacgaatatcag
gctgcgggggagaaagccagcacccacctgatctctggctatacagaccgcaccggccgt
ggcacccatctccattggaagcacgaagacggtttcgacatcggcctgaccgccgacaac
agcgccgaggccaaggcgtatcgcgaacacgccgacgacggcagcttcgacaccaccatc
gtctggaacaagcacattcgcttggccaccgtcatcgatgcccttggcgcgcagacacgc
tactacttcgacttcctgggctacacctaccgcatcattcatccggaggtgcgcagtgcg
gacggcctgctctatgcgcatgaagagtggttcttccgggatgcgaacaagaacatcacc
aagcatctgcatcctgatggcagccaggaccgctacacctacgacgcgcacaacaacctc
gtgagtcacacccgtgccgaccacagcacggtgcacatcgcccacgacgacatggacaat
ctcaccggcattcgcgatgccgaagggcatgcgtggaagcgcacctacgagggcgtcaat
ctcattgaggaaatcgacccgctgggccacaagaccgagtacgcctacaacgagcacggc
ctgccggtggagatcaccgatgccaagggcggcaagaagcagttggcttatgacgatgcg
ggccaactcgttgcgtacaccgactgctcgggcaagaccagcagttgggcctatgacgag
cgcggccgtctgatcaagcagcgcaatgcggccggcgagatcactcggtaccgctacgag
cgcggccaactgacgcgcatcgtcaatcccgacggcaccgaggagcagttggcgcacgat
gccgaaggccgcttgctctcgcaccgcgatgccctgcagcgcgagacacgctacgaatac
aacgctgtcggcctcatcacccagcgcctggacgccaaccgcaacaccatcgactaccaa
tgggaccgcctgggccgcctggcagcgctgcgcaacgagaacggccgcacccacagcttc
agctacgacccgctgggcaagctgctgtccgaagtgcagttcgacggcagcagaaccgtg
tacggctacacccctgccacgggcgtgttgcgccaggtcaccgaaggcgatgcggtcacc
cagctcgacttcgatcccacggggcgcctgacgaagcgcaccgcggggctgtatatcgag
cccacggacagccagggccggccaaccgggcgtacgctggatgcgaagagcatccagacc
gatagctatgcctacgacggcaacgggcagctcatcgatgcccacaacccgcatattcac
ttgcagtggttccctgatgctgcgggtaacgtcaagaccgagcaccatcattacctgatc
gacgaagaaggtaggccgagcagccagccgatgacggcagtctggcagcaccgctacgac
gagttgggcaatcgcatccagaccacgcgccctgacggccacaccaccacctggctgaca
tacggctcaggtcacgtgcacggcctgatgctcgatggcatggaggccgtgcagatcgag
cgcgacgacctgcaccgcgaggtcaagcggatacaggccaacgaggtggcgcaggagcag
cagtacgacccggcagggcggctgaaggctcaggtgctcagccgggtggagaggctgagc
cagagccgaggtggctcttctacttccaacgccagcgcgctcggcatccagcgcaagtac
agctacgaccgagccggccaactcaccgacatcggcgacagccgccgtggcagcctgagt
taccgctacgaccctgcgggccgtctgctgcaggcgcagagccaactgggcaccgagacc
tttgcgttcgatccggccagcaacatcctggacccgatggcgccggcggccagggaggcc
gggacgattcacaacatcccgcccatcctgaacaacctagtgaaggactacgcgggcacg
cacttcgagtacgacgtcaggggcaatatggtccagcggctgcacaacggccagcgcacg
cgcttcgcttgggatgcgctcgggcgattgaccgaggcgcgcacgcaggacacgcgaact
tcattcctgtatgacccgctgggtcggcggattgccaagcgcagcgagcccatcgtcatc
accagctcgatggatggcagccattaccacgcggccgagtaccggcgccagatccacgag
cgcggcctgggcgcggtgctcttcggttgggacggtgaccagatggcctgggagtgcgac
tacgcgcgacagcggacggtgcactacgtgttcgagcccggcagcttcgtgccgctgctg
caggccaaatccaatgtagacatgcgtcgggcgatgctgcagcgaccgcaggcggtgacg
caaagctatgtcgatgcgcaaggcaactacgacctggatcaggacccgctgtacaacggg
atgtacgaggcgggcatcggcagcgacggggagccaccggagccgctgacggacatccac
tattaccagtgcgaccacctcggcacacctatggagctgaccgatgagggcggcaatgtc
gcgtgggaggcgaattacaaggcgtggggagaagccaggctcacgatcagcgaggcggca
aggaaagcggggctgaagaatccgattcggttccaggggcagtatctggacgaggagacc
gggctgcactacaaccggttcaggtattacgacccggtgatgggaaggtttgtgagcaag
gacccgattgggctgcaaggtggaatcaaccttcatcactatgccccgaattcaaccgag
tggattgatcccttcgggcttattcgaggtcggccgaatataggagacgccggtcgaaaa
caaaaaacagggaagccaaatatcgataatcgctgcctctcatgtaaaaaatgggaaatt
aatcgcttcgacaggatatgcgaagggcaaattccaggcgtaggggtcgcaaagtatctt
agagatccgaaagataaaagatggtattcagtcgatcaaaccgcacacggtggtagtgca
tttaaacaatacaaccaaaaaggcaatctcctaaatcatattcgcgatctggatgaattt
ggagaccaaatggggaaacacaaaggcaacgcgggaaaaattgttgatcttaagtcattg
aaatgcaaggatgttaattcatga
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