Variovorax paradoxus EPS: Varpa_5757
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Entry
Varpa_5757 CDS
T01392
Name
(GenBank) DNA-directed RNA polymerase, alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
vpe
Variovorax paradoxus EPS
Pathway
vpe03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Varpa_5757
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vpe03021
]
Varpa_5757
03400 DNA repair and recombination proteins [BR:
vpe03400
]
Varpa_5757
Enzymes [BR:
vpe01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Varpa_5757
Transcription machinery [BR:
vpe03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Varpa_5757
DNA repair and recombination proteins [BR:
vpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Varpa_5757
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
RNA_pol_L_2
RAD51D_N
Motif
Other DBs
NCBI-ProteinID:
ADU39909
UniProt:
E6UWH9
LinkDB
All DBs
Position
complement(6264573..6265562)
Genome browser
AA seq
329 aa
AA seq
DB search
MQTTLLKPKTIQVEQLAANKAKVTLEPFERGYGHTLGNALRRVLLSSMVGYSATEVTIAG
VLHEYSSIDGVQEDVVNILLNLKGVVFKLHNRDEVTLSLRKDGEGPVLASDIQTPHDVEI
INPDHVIAHLSQGGKLDMQIKVEKGRGYVPGTMRRYADEPTKSIGRIVLDASFSPVKRVS
YTVESARVEQRTDLDKLLVEIETNGAITAEDAVRASAKILVEQLAVFAQLEGGELAAFDA
PAPRSAQQFDPILLRPVDELELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSL
NEIKEVLASRGLTLGMKLESWPPAGLDKR
NT seq
990 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaccaccctgctgaaacccaagaccatccaggtcgagcaacttgccgccaacaag
gccaaggtgacgctcgagcctttcgagcgcggctacggccacacgctcggcaacgcgctg
cgtcgcgttctgctgtcgtccatggtcggctactcggccaccgaagtcacgatcgctggc
gttctgcatgagtactcgtcgatcgacggcgtgcaggaagatgtcgtcaacatccttctg
aatctcaagggcgtggtgttcaaactccacaaccgcgacgaagtcacgctgagcctgcgc
aaggacggcgaaggcccggtcctcgcatcggacatccagactccgcacgatgtcgagatc
atcaaccctgatcacgtgatcgcgcacctgtcgcaaggcggcaagctcgacatgcagatc
aaggtcgaaaagggtcgcggctacgtgcccggcacgatgcgccgctacgccgacgagccg
accaagtcgattggccgcatcgttctcgacgcgtctttctcgcccgtcaagcgcgtgagc
tacacggtcgaaagcgcccgcgtcgaacagcgtaccgatctggacaagctcctggtcgag
atcgaaaccaacggcgccatcaccgctgaagatgcggttcgcgcctcggctaaaatcctg
gtcgagcagctcgcagtgttcgcacaactcgaaggcggcgaactggctgcattcgatgca
ccggcaccgcgcagcgcgcagcaattcgatccgatcctgctgcgccctgtcgacgaactc
gagctcaccgtgcgttcggccaactgcctgaaggccgaaaacatctactacatcggtgac
ctgatccagcgcactgaaaacgagctgctcaagaccccgaacctgggtcgcaagtcgctc
aacgagatcaaggaagtcctcgcttcgcgcggcctgaccttgggtatgaagcttgaaagc
tggccgccggccggtctcgacaagcgttga
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