Variovorax paradoxus EPS: Varpa_5858
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Entry
Varpa_5858 CDS
T01392
Name
(GenBank) Tetracycline transcriptional regulator YcdC domain-containing protein
KO
K09017
TetR/AcrR family transcriptional regulator
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
vpe03000
]
Varpa_5858
Transcription factors [BR:
vpe03000
]
Prokaryotic type
Helix-turn-helix
TetR/AcrR family
Varpa_5858
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TetR_C_3
TetR_N
FaeA
Motif
Other DBs
NCBI-ProteinID:
ADU40010
UniProt:
E6UXM0
LinkDB
All DBs
Position
6368728..6369378
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AA seq
216 aa
AA seq
DB search
MSVEETESDAPATRGRSRKYTQVLGVIYQAAIDVFASEGLAGATTQAIADKAGLSKAQLH
YYIESKEALYRLVLQDILNDWIVVFGFSDEAFGPRKVLSDLIHRKMVFSFQHPLRSRIFT
AEMMRGAPVLNTMMDTSKARTDQAAAVIQNWMNQGLMDTADPMLVLFHIWAVTQFYADHA
TQAAYFRNVAQDGDDKDRRYLIEHVTDFLLKGAGVK
NT seq
651 nt
NT seq
+upstream
nt +downstream
nt
gtgagcgttgaagaaaccgagagcgacgcaccggccacgcgcggccggtcgcgcaagtac
acgcaggtgctgggcgtcatctaccaggccgccatcgacgtgttcgcgagcgagggcctg
gccggcgcaacgacgcaggccatcgccgacaaggccgggctctcgaaggcgcagctgcac
tactacatcgagagcaaggaagcgctctaccggctggtgctgcaggacatcctgaacgac
tggatcgtggtgttcggcttcagcgacgaggccttcgggccgcgcaaggtgctgagcgac
ctgatccatcgcaagatggtgttctcgttccagcatccgctgcgctcgcgcatcttcacc
gccgagatgatgcgcggcgcgccggtgctcaacaccatgatggatacgagcaaggcgcgc
accgaccaggcggccgccgtgatccagaactggatgaaccaggggctgatggacaccgcc
gacccgatgctggtgctgttccacatctgggcggtgacgcagttctatgcggaccatgcg
acgcaggccgcgtacttccgcaacgtcgcgcaggacggcgacgacaaggaccggcgctac
ctgatcgagcatgtgacggatttcctgctgaagggggcgggggtcaagtag
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integrated database retrieval system
