Variovorax paradoxus EPS: Varpa_5930
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Entry
Varpa_5930 CDS
T01392
Name
(GenBank) DNA topoisomerase III
KO
K03169
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vpe03032
]
Varpa_5930
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
Varpa_5930
DNA replication proteins [BR:
vpe03032
]
Prokaryotic type
DNA Topoisomerases
Varpa_5930
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_Crpt
SWIB
Toprim
HC2
Auto_anti-p27
Zn_ribbon_PADR1
Spore_SspJ
Motif
Other DBs
NCBI-ProteinID:
ADU40082
UniProt:
E6UYV7
LinkDB
All DBs
Position
6448765..6451734
Genome browser
AA seq
989 aa
AA seq
DB search
MTKTLVIAEKPSVAQDIVRALTPVAGKFDKHDEHFENDSYVVTSAVGHLVEIQAPEEFDV
KRGKWSFANLPVIPPHFDLKPVDKTKTRLNAVVKQAKRKDVTQLINACDAGREGELIFRL
IEQYAGGKSPLGKPVKRLWLQSMTPQAIRDGFDALRTEKQMQGLADAARSRSEADWLVGI
NGTRAMTAFNSRDGGFFLTTVGRVQTPTLSVVVEREEQIRKFVSRDYWEIHGSFAAEAGQ
YPGKWFNPDWKKANAPLLANGEPDAEQRADRVWSEQEARAIADASRGKPATVTEESKPTT
QASPALFDLTSLQREANGRFGFSAKTTLALAQSLYERHKALTYPRTDSRALPEDYLPVVK
DTMEMLANSGMKHLAPFAKQAVDGNYVKPNKRIFDNAKVSDHFAIIPTLQAPSGLSEAEQ
KLYDFVVRRFLSVFFPSAEHQVTTRISTVEQGGKKYPFRTDGKVLVKPGWLAIYGKEAQD
DEKEDDKDGKRLVPVKPGEIVQNESADLKGLKTRPPARYSEATLLGAMEGAGKTIDDDEL
REAMQEKGLGTPATRAATIEGLIAEKYMLREGRELIPTAKAFQLMTLLRGLGVEELSKAE
LTGEWEYKLAQMEKGALSRDAFMREIAQMTEHIVKKAKEYDRDTVPGDYATLATPCPNCG
GIVRENYRRYGCVGKSGTGEDACGFSFGKSPAGRTFEVAEAEALLRDKHIGPLEGFRSKA
GWPFTAEIILKYDEEESKNWKLEFDFGDDKNGDTGEIVDFSEQDTVGPCPVCGAPVFEHG
SNYVCEKSVPTNAQPTPSCTFKTGKIILQQPVERAQMEKLLATGKTDLLDKFVSMRTRRA
FKAFLTWNAEEGKVTFEFAPREGGSKFPPRKTFGKPAAKTAAAKKVAAKKTPAAKKAPAA
KKAAAPRKPGAGLKPSDSLAAVIGTEPVARTEVIKKLWDYIKANGLQDATNKRAINADAK
LKPVFGKDQVTMFELAGIVGKHLSAPDAA
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagacgttggtaatcgcagaaaagccgtcggtggcacaggacatcgtccgtgcc
ctcacgccggtggccggcaaattcgacaaacatgacgagcatttcgagaacgacagctat
gtcgtgaccagcgctgtcggtcacctggtcgagatccaggcgcccgaggagttcgacgtc
aagcggggcaagtggagctttgccaacctgcccgtgatcccgccgcacttcgacctgaag
cccgtcgacaagacaaagacgcgcctgaacgcggtggtcaagcaggccaagcgcaaggac
gtgacgcagctcatcaacgcctgcgacgcgggccgcgagggcgaactgatcttccgcctc
atcgagcagtacgccggcggcaagagcccgctgggcaagccggtcaagcggctgtggctg
cagtcgatgacaccgcaggcgattcgcgacggcttcgatgcgctgcgcaccgaaaagcag
atgcagggcctggccgacgcggcgcgctcgcgctccgaggccgactggctggtgggcatc
aacggcacgcgcgccatgaccgcattcaattcgcgcgacggcggcttcttcctcacgacc
gtgggccgcgtgcagacgccgacgctgtcggtcgtcgtggagcgcgaagaacagattcgc
aagttcgtctcgcgcgactactgggaaatccacggcagcttcgcggccgaagccggccag
tacccgggcaagtggttcaaccctgattggaagaaagcgaacgccccgctgctggccaac
ggtgaacccgatgccgagcagcgtgccgaccgagtctggagcgagcaggaagcccgcgcc
atcgccgacgcttcgcgcggcaaacccgccacggtcaccgaagagagcaagcccaccacg
caggcctcgcccgcgctgttcgacctgacctcgctgcagcgcgaggccaacggccgtttc
ggcttcagcgccaagaccacgctcgcactggcccagagcctgtacgaacgccacaaggcg
ctgacctatccgcgtaccgattcgcgcgcgctgccggaagactatctgccggtggtcaag
gacaccatggagatgctcgccaacagcggcatgaaacacctggcgccgttcgccaagcag
gcggtcgacggcaactacgtcaagcccaacaagcgcatcttcgacaacgccaaggtgtcg
gatcacttcgccatcatcccgacgctgcaggccccgagcggcctgagcgaagccgagcag
aagctgtacgacttcgtggtgcgccgctttctctcggtgttcttcccgagcgccgagcac
caggtgaccacgcgcatcagcacggtggagcagggcggcaagaagtacccgttccgcacc
gacggcaaggtgctggtgaagccgggctggctcgccatctacggcaaggaagcgcaggac
gacgagaaggaagacgacaaggacggcaagcgcctcgtgccggtgaagccgggcgagatc
gtgcagaacgagtcggccgacctcaagggcctgaagacgcgcccgcccgcacgctattcg
gaagccacgctgctgggcgccatggaaggcgccggcaagaccatcgacgacgacgagctg
cgcgaggccatgcaggagaagggcctgggcacgccagccacccgcgcggccaccatcgaa
gggctgatcgccgagaagtacatgctgcgcgaaggccgcgaactcatcccgaccgcgaag
gccttccagctcatgacgctgctgcgcggcctgggcgtggaagaactctccaaggccgag
ctcaccggcgagtgggaatacaagctcgcgcagatggagaagggcgccttgagccgcgac
gccttcatgcgcgagatcgcccagatgacggagcacatcgtcaagaaggccaaggagtac
gaccgcgacaccgtgccgggcgactacgccacgctcgcgacgccgtgccccaactgcggc
ggcatcgtgcgcgaaaactaccgccgctacggctgcgtgggcaagagcggcacgggcgag
gacgcctgcggcttctcgttcggcaaatcgccggccgggcgcaccttcgaggtggcggag
gccgaggcgctcctgcgcgacaagcacatcggcccgctggagggcttccgctccaaggcc
ggctggcccttcaccgccgagatcatcctcaagtacgacgaggaagaatcgaagaactgg
aagctggagttcgacttcggcgacgacaagaacggcgacaccggcgagatcgtcgacttc
agcgagcaggacaccgtgggcccgtgcccggtgtgcggcgcgccggtgttcgagcacggc
agcaactacgtctgcgagaagtcggtgccgaccaacgcgcagccgacgcccagctgcacc
ttcaagaccggcaagatcatcctgcagcagccggtggagcgcgcgcagatggaaaagctg
ctcgccaccggcaagaccgacctgctcgacaagttcgtgagcatgcgcacccgccgcgcc
ttcaaggccttcctcacgtggaacgccgaagaaggcaaggtcaccttcgaattcgcgccg
cgcgaaggcggcagcaaattcccgccgcgcaagaccttcggcaagccggcggccaagacc
gcggctgcgaagaaggtggcggcgaagaagacgcccgctgccaagaaagcgccagcggcg
aagaaggccgccgcgccgcgcaagccgggcgcgggcctcaagcccagcgactcgctggcc
gcggtgatcggcaccgaaccggtggcgcgcaccgaggtcatcaagaaactgtgggactac
atcaaggccaacggcctgcaggacgcgaccaacaagcgcgcgatcaatgccgatgccaag
ttgaagcccgtgttcggcaaggaccaggtgacgatgttcgaactcgcgggcatcgtgggc
aagcacctctcggcgcccgacgcggcctga
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