Variovorax paradoxus EPS: Varpa_5939
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Entry
Varpa_5939 CDS
T01392
Name
(GenBank) DEAD/DEAH box helicase domain protein
KO
K05591
ATP-dependent RNA helicase DbpA [EC:
5.6.2.6
]
Organism
vpe
Variovorax paradoxus EPS
Brite
KEGG Orthology (KO) [BR:
vpe00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
vpe03009
]
Varpa_5939
Enzymes [BR:
vpe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Varpa_5939
Ribosome biogenesis [BR:
vpe03009
]
Prokaryotic type
rRNA helicases
Varpa_5939
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
CMS1
BON
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ADU40091
UniProt:
E6UYW6
LinkDB
All DBs
Position
6459379..6460830
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AA seq
483 aa
AA seq
DB search
MTTTNPTADGSQAQVSTENGFATLALSPQMLANLTQLGYTQMTAIQAAALPPALLGKDLI
AQAKTGSGKTAAFALALLANLNARRFAIQAMVLCPTRELADQVTTEIRRLARAEENIKVV
TLCGGVALRGQIASLEHGAHIVVGTPGRIMDHLERGNLDLSALNTLVLDEADRMLDMGFF
EDIVKVARQCPKERQTLLFSATYPEGIAKLAQQFMKSPQQITVQAQHEGSKIRQRWYQVK
DSERLHTVSLLLDHFRPVSTLAFCNTKQQCRDLVEVLQAQGFSALALFGELEQRERDQVL
VQFANRSCSVLVATDVAARGLDISHLEAVINVDVTPDSEIHIHRVGRTGRVGQSGDAEGL
ALNLASMNEMGSVGKIEQLQGRESEWHELAELTPGKGAPLQPPMATLQIVGGRKEKIRAG
DVLGALTGDCGYTKDQVGKINVNEFSTYVAVDRAIAAEAAHKLGSGRVKGKSVKVRLLTL
QDQ
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atgactacgaccaatcccacagccgacggctcccaagcccaggtttcgaccgaaaacggc
tttgccaccctggcgctctcgccccagatgctggccaacctcacccagctcggctacacg
cagatgacggccatccaggccgccgccctgccgccggcgctgttgggcaaggacctgatc
gcccaggccaagaccggcagcggcaagaccgccgcctttgccctcgcgctgctcgccaat
ctcaacgcacgccgcttcgccatccaggcgatggtgctgtgcccgacgcgcgagctggcc
gaccaggtcacgaccgaaatccggcgcctggcgcgcgcggaagaaaacatcaaggtggtc
acgctctgcggcggcgtcgcgctgcgcggacagatcgccagcctggagcacggcgcgcac
atcgtcgtgggcacgccgggccggatcatggaccacctggagcgcggcaacctcgacctc
tcggcgctcaacacgctggtgctcgacgaagccgaccgcatgctggacatgggcttcttc
gaagacatcgtgaaggtcgcgcgccagtgcccgaaggaacgccagacgctgctgttctcg
gccacgtaccctgaaggcatcgccaagctcgcgcagcagttcatgaagagcccgcagcag
atcacggtgcaggcacagcatgaaggcagcaagatccgccagcgctggtaccaggtgaag
gacagcgagcggctgcacaccgtgagcctgctgctcgaccatttccgccccgtcagcaca
ctggccttctgcaacaccaagcagcagtgccgcgacctcgtcgaagtgctgcaggcgcag
ggcttcagcgcgctggcgctcttcggcgagctcgaacagcgcgagcgcgaccaggtgctg
gtgcagttcgccaaccgcagttgctccgtgctcgtggccaccgacgtggcggcgcgcggc
ctggacatctcgcacctcgaagcggtgatcaacgtcgacgtgacgcctgattcggaaatc
cacatccaccgcgtcggccgcaccggtcgcgtgggccagtcgggcgatgccgaagggctc
gcgctgaacctggccagcatgaacgagatgggcagcgtcggaaagatcgagcaactgcag
ggccgcgagtccgaatggcacgaactggccgagctcacgcccggcaagggcgcgccgctg
caaccaccgatggccacgctgcagatcgtcggcgggcgcaaggaaaagatccgcgccggc
gacgtgctgggtgcgctcaccggcgactgcggctacacgaaggaccaggtcggcaagatc
aacgtcaacgagttctcgacgtatgtggcggtggaccgcgccatcgccgcggaagcggcg
cacaagctcggcagcggccgggtcaagggcaagtcggtcaaggtgcgcctgctgacgctg
caggaccagtaa
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