KEGG   Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_00535
Entry
M634_00535        CDS       T02761                                 
Name
(GenBank) RNA-binding protein Hfq
  KO
K03666  host factor-I protein
Organism
vpf  Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf02024  Quorum sensing
vpf03018  RNA degradation
vpf05111  Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:vpf00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M634_00535
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    M634_00535
   05111 Biofilm formation - Vibrio cholerae
    M634_00535
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:vpf03019]
    M634_00535
   03036 Chromosome and associated proteins [BR:vpf03036]
    M634_00535
Messenger RNA biogenesis [BR:vpf03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     M634_00535
Chromosome and associated proteins [BR:vpf03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    M634_00535
SSDB
Motif
Pfam: Hfq LSM Hfq_1
Other DBs
NCBI-ProteinID: AGQ89523
LinkDB
Position
I:complement(107130..107393)
AA seq 87 aa
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPQGDRPQEKSED
NT seq 264 nt   +upstreamnt  +downstreamnt
atggctaaggggcaatctctacaagacccatttctaaacgcgctacgtcgtgagcgtatt
ccagtgtctatctaccttgtgaacggtatcaaactacaaggtcagatcgaatcattcgat
caattcgtgatcctgctgaaaaatactgtaaaccaaatggtgtacaagcacgcgatttct
acagttgtgccggctcgtccagtgagccaccacagcggtgatcgtcctcaaggcgaccgt
ccacaagagaaatcagaagattaa

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