Vibrio parahaemolyticus O1 Kuk FDA_R31: M634_00535
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Entry
M634_00535 CDS
T02761
Name
(GenBank) RNA-binding protein Hfq
KO
K03666
host factor-I protein
Organism
vpf
Vibrio parahaemolyticus O1:Kuk FDA_R31
Pathway
vpf02024
Quorum sensing
vpf03018
RNA degradation
vpf05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vpf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M634_00535
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
M634_00535
05111 Biofilm formation - Vibrio cholerae
M634_00535
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vpf03019
]
M634_00535
03036 Chromosome and associated proteins [BR:
vpf03036
]
M634_00535
Messenger RNA biogenesis [BR:
vpf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
M634_00535
Chromosome and associated proteins [BR:
vpf03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
M634_00535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
LSM
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
AGQ89523
LinkDB
All DBs
Position
I:complement(107130..107393)
Genome browser
AA seq
87 aa
AA seq
DB search
MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS
TVVPARPVSHHSGDRPQGDRPQEKSED
NT seq
264 nt
NT seq
+upstream
nt +downstream
nt
atggctaaggggcaatctctacaagacccatttctaaacgcgctacgtcgtgagcgtatt
ccagtgtctatctaccttgtgaacggtatcaaactacaaggtcagatcgaatcattcgat
caattcgtgatcctgctgaaaaatactgtaaaccaaatggtgtacaagcacgcgatttct
acagttgtgccggctcgtccagtgagccaccacagcggtgatcgtcctcaaggcgaccgt
ccacaagagaaatcagaagattaa
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